Detailed information on CNT30553095


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691897Oryza glaberrimaOryza sativa81.1643.8399.69323reverse complement
CNT30678384Oryza glaberrimaSetaria viridis21.1119.3590.4884reverse complement
CNT30101056Oryza glaberrimaOryza rufipogon93.9784.8198.66374reverse complement
CNT30575942Oryza glaberrimaOryza barthii100.2558.598.75399reverse complement

Expression of CNT30553095

Peptides detected in this lncRNA

>peptide 1 (75 aa)
KPEFGSRVLDALRETDGKAGKKRKRGLPKEGWTFEALPFGTDVIVIAASFTLITVVMFGTTYLVWKLGAIHFNEF*

>peptide 2 (84 aa)
EAGVREPGAGRAPGDGREGREEAQARPAQGRVDVRGAAVRHRRDRHRRLLHAHHRRHVRHHVPRLEARRHSLQRVLGYVLSLTQ*

>peptide 3 (43 aa)
RSRSSGAGCWTRSGRRTGRPGRSASAACPRKGGRSRRCRSAPT*

Sequence

>CNT30553095
AGAAGCCGGAGTTCGGGAGCCGGGTGCTGGACGCGCTCCGGGAGACGGACGGGAAGGCCGGGAAGAAGCGCAAGCGCGGCCTGCCCAAGGAAGGGTGGAC
GTTCGAGGCGCTGCCGTTCGGCACCGACGTGATCGTCATCGCCGCCTCCTTCACGCTCATCACCGTCGTCATGTTCGGCACCACGTACCTCGTCTGGAAG
CTCGGCGCCATTCACTTCAACGAGTTCTAGGCTACGTACTATCACTCACACAATGAGCTCGCTAGATTTGTGGGTCTTTGGGTGATGAAATCGCGTTGGA
TTTGTAGCTGCCTTTTGCGGTGCTTTGATCAGATACTCGTGTGATATTGTACTGAACTGCCGGCTTTGGTTTTTAGGGTGGATTTTGGAACATCGTTG