Detailed information on CNT30553082


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691798Oryza glaberrimaOryza sativa3.6333.6486.1172forward
CNT30104980Oryza glaberrimaOryza longistaminata4.4921.7186.5289forward

Expression of CNT30553082

Peptides detected in this lncRNA

>peptide 1 (61 aa)
RALPPLSIAPPSRSDRLHRRPSQIHLDRRLSLNPLVVRSQMAAHSLSLLPPRSPARLPAPT*

>peptide 2 (29 aa)
MSKFININMNVGNARMTYIVKRKEYVIVY*

>peptide 3 (29 aa)
MLLSKDANIMALISYCQKDADIRVGPNIK*

>peptide 4 (31 aa)
APSLLFLSRLPPDRIAFTGGHPRFTSTDGCP*

>peptide 5 (29 aa)
MELMGEHSDEAPAKLPLICYCQKTRILWL*

>peptide 6 (94 aa)
PRPPSSFYRASLQIGSPSPAAIPDSPRPTAVPEPFGCTQPDGRPLAQSPATTVAGKTPSADVTTGTDELAAIQEWEVSTYGGQNTWRQVTHNTR*

>peptide 7 (84 aa)
MNTEVFECFLIRFEYFWSASIEYRVSDDDDPTAPRLPPDQLISNRYQSKWIIWTSGSLWFGILQHMGGAGLHWSDLEKKKTCMI*

>peptide 8 (49 aa)
MTHFSQSDYYCDHNLILLLELMYWLISFEVPGFNLLATLKKEVEVKWDF*

>peptide 9 (43 aa)
MTSNKIIKLVRGGLLHMYLRFEPFGIGEKKKAFDMLFLNCFTN*

>peptide 10 (43 aa)
MDNMDFRLTMVWHFATHGRSRLTLVRFREKKNMHDLMDDVERC*

>peptide 11 (33 aa)
MLSILESISYLLYTVKLMDNEVMSTMNGVDGRA*

>peptide 12 (32 aa)
MLLSIEPHCEVVPCDLIVLMRFTSSMTRKTSV*

Sequence

>CNT30553082
CCGCGCCCTCCCTCCTCTTTCTATCGCGCCTCCCTCCAGATCGGATCGCCTTCACCGGCGGCCATCCCAGATTCACCTCGACCGACGGCTGTCCCTGAAC
CCTTTGGTTGTACGCAGCCAGATGGCCGCCCACTCGCTCAGTCTCCTGCCACCACGGTCGCCGGCAAGACTCCCAGCGCCGACGTGACAACCGGAACGGA
CGAGCTCGCAGCCATCCAAGAATGGGAGGTGTCCACCTACGGCGGCCAAAACACATGGAGGCAAGTAACACATAACACGAGATAAAAATCAGTGCACAGC
TTGGACTCTTTCCCTAGCCCAAATAAGTCCGAGATGATTGTTTGCATCACTGCATCTGCAACAGTACCAAGAAGTGCTTCGGAAGTGTTTGTGGAATGAC
TTCAAACAAAATAATCAAACTTGTTCGTGGTGGCTTGCTGCATATGTATTTAAGGTTTGAACCTTTTGGCATTGGCGAAAAAAAAAAGGCTTTCGATATG
CTGTTCTTGAATTGTTTCACAAATTGATGGAAAGGAACTAAATTGTTTTCATGCAGAATTTTAGTAAGTTGTTTCCTATCGACAATATTCCCCATAAATT
GTTACACCAATCCTTTTTCTGATGAAGTGGAAGAAAGGCTCTTGATATTTCTCAGGTTAGTGCTGCCTTATTATTGCCATGTTTTAGCACTAATCCTTCA
TCCTTTTTTGCATGACTCATTTCTCACAGTCAGATTACTACTGTGACCACAACCTAATCCTTTTATTAGAACTCATGTATTGGTTAATTTCTTTTGAGGT
GCCTGGATTTAACCTTCTAGCCACTTTGAAAAAGGAAGTTGAAGTAAAGTGGGATTTTTAGGAGAGCAGAGTCAACAACTGCATTTTTCTGTGGTCCTTA
CATAGGGATATGAACACGGAAGTTTTTGAGTGCTTTCTGATAAGATTTGAATATTTTTGGAGTGCTTCTATAGAGTATAGAGTTTCTGATGACGACGATC
CAACGGCTCCCCGCCTCCCTCCCGATCAATTAATCTCTAACAGATATCAAAGTAAATGGATAATATGGACTTCAGGCTCACTATGGTTTGGCATTTTGCA
ACACATGGGAGGAGCAGGCTTACATTGGTCCGATTTAGAGAAAAAAAAAACATGCATGATCTGATGGATGATGTCGAGCGCTGCTAGGAAATGACAATTG
TGCGACTGGTGAGACCATGGAGAAGCTGTTCGAATTGGCACAGTTGACACTTACTTGATATACTAAGATTTTGGTGTCATTTATATGATGGGGTTCTCAT
GCTTAGTATTTTGGAATCTATATCCTATTTATTGTATACTGTAAAGCTCATGGATAACGAAGTTATGTCTACGATGAATGGAGTTGATGGGAGAGCATAG
CGATGAAGCACCGGCAAAGCTACCTTTGATATGTTATTGTCAAAAGACGCGAATATTATGGCTTTGATATCTTATTGTCAAAAAGATGCGGATATTAGGG
TAGGACCTAATATCAAATAATTAGAAGTGGTGAGGCTTCTAGCCCACCACCCTGTGGAGCTAGCCAGAATACCCTGGGCGCCGGCGTTTGTCATATACTT
TCTCCGTTTCACAATGTAAGTCATTCTAACATTTCCCACATTCATATTGATGTTAATGAATCTAAATAGATATATATGTCTAAATTCATTAACATCAATA
TGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAAGGAGTATGTTATTGTCTATTGAGCCGCATTGTGAAGTAGTTCCTTGTGATCTAATTG
TGCTTATGCGCTTCACAAGCTCCATGACAAGGAAAACCTCAGTTTAATTAATTTGGCCCGTGTGCATGGATATGGCAAAAAGTGATGATTTACATGACAA
ATCAAGATGTATCATGGTAAATCTTTTTGTGAAGTTTGTTTTCCTTAAGTAGGAAACATTTTCAAAATTTGATGTATGTTG