Detailed information on CNT30553080


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10M12|40C1_ORYSJ, E-value = 4e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520517Oryza glaberrimaSetaria italica43.2738.6492.44119forward
CNT30287058Oryza glaberrimaTriticum aestivum29.4523.2887.6581forward
CNT30436477Oryza glaberrimaAegilops tauschii42.9138.8290.68118forward
CNT30252195Oryza glaberrimaAvena sativa48.7332.2192.54134forward
CNT30658727Oryza glaberrimaTriticum dicoccoides43.2717.284.03119forward
CNT30446776Oryza glaberrimaSaccharum spontaneum43.6439.0993.33120forward
CNT30680806Oryza glaberrimaTriticum urartu29.4523.3486.4281forward
CNT30721394Oryza glaberrimaTriticum spelta47.6449.0689.31131forward
CNT30596665Oryza glaberrimaOryza meridionalis26.1815.0691.6772forward

Expression of CNT30553080

Peptides detected in this lncRNA

>peptide 1 (90 aa)
RVALAEGVLDGEAGGLVDERERRVALLVLDLGAEAHVLVPVLVLVARVGRGEDDVPLAHGDAVPLVGAAEDLALFGRFLGRVVLCECDGSN

>peptide 2 (90 aa)
TGWPWPRECLMARPVALLTSANAGLPSSSLILALKRMSLYQCWCSSRGLVGARTTFPSRTATQYPSSARQKILLSSGGFWEGLCCVSVMDQ

Sequence

>CNT30553080
ACCGGGTGGCCCTGGCCGAGGGAGTGCTTGATGGCGAGGCCGGTGGCCTTGTTGACGAGCGCGAACGCCGGGTTGCCCTCCTCGTCCTTGATCTTGGCGC
TGAAGCGCATGTCCTTGTACCAGTGCTGGTGCTCGTCGCGCGGGTTGGTCGGGGCGAGGACGACGTTCCCCTCGCGCACGGCGACGCAGTACCCCTCGTC
GGCGCGGCAGAAGATCTTGCTCTCTTCGGGAGGTTTTTGGGAAGGGTTGTGTTGTGTGAGTGTGATGGATCAAAC