CANTATAdb - search

Detailed information on CNT30553023

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30101099	Oryza glaberrima	Oryza rufipogon	59.27	49.74	98.97	291	forward
CNT30575793	Oryza glaberrima	Oryza barthii	59.88	49.08	99.66	294	forward

Expression of CNT30553023

Peptides detected in this lncRNA

>peptide 1 (40 aa)
DKWWIKKCCYLQDSRCRVKTTPSLNLQSSSEFLHLGRMID*

Sequence

>CNT30553023
GACAAATGGTGGATTAAAAAATGCTGTTATCTCCAAGATTCAAGATGCAGAGTCAAAACTACTCCGTCTCTGAACCTGCAGAGTAGCTCTGAATTTCTTC
ACCTTGGTAGAATGATTGACTGATCTTTGCTCAATTGACAGCTTACGGCTTACGCAAATCCACACTAATAATCGAGGTTCTACTAAAATTTCCAGGGTTC
CAAACACACTAAAAAAATCAGGGGAGGACCTCCAAATCAGACGAAGACAGCAGACAACGCTACTACTACTAGCAGCTAAAACATCCTGAGAATCGCGGCG
AGCGCGGCGGTGAATGCGGCGGCGGACTTGTCCTTGGCGGCGGCCGGCGGGGACGGTGGCGGGAGCTTCTCGGTCTTGATTTGGAGGCGCATGCCGCCGA
AGCAGTAGCCGTAGCTGCAGATGAAGTAGTAGGTCTTGGTCTCGTTGAGCTCGAAGGCGTAGGTGCGGCCCTTGCTGTAGTTGGAGATGGC