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Detailed information on CNT30553011


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8RW93|LBP65_ARATH, E-value = 3e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30664801Oryza glaberrimaTriticum dicoccoides9.2925.8886.4281forward
CNT30447788Oryza glaberrimaSaccharum spontaneum16.8625.3489.8147forward
CNT30367039Oryza glaberrimaSorghum bicolor16.8625.1385.71147forward
CNT30575856Oryza glaberrimaOryza barthii97.7194.1498.36852forward

Expression of CNT30553011

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MGRLRLMPRMLARRAVQRHTAASRSARPWMRFRARSVAITPAFVAMPTHRTAPADRSRSMACPLPSFAC*

>peptide 2 (39 aa)
AVRTDAYTMRSIEYKLINQLCRYTYTSRRMKHALITSWN*

Sequence

>CNT30553011
ATGCAGTACGTACTGATGCATATACGATGAGATCCATCGAGTACAAATTAATTAATCAATTATGCAGATACACATATACAAGTAGACGAATGAAGCATGC
TTTAATTACGTCGTGGAACTGAATCATATGCATGCATATATATCTCATTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGATGATT
TGAACAAGGAACAAATTAGACATAGATAGATATATAGTTGTACGTGGCCTGGTGGTCGTTCTTCGTACGTTCTTGTGTGTAGCAAGCAGTGAAGTAGAAT
GGAGCAGCAGCTATATTAGTTGCTGCACTGGAAGCCGGAGGGGACGGAGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGGAGGTTGAGGTTG
ATGCCAAGGATGTTGGCGCGGAGGGCGGTGCAGAGGCACACGGCGGCCTCAAGGTCGGCGAGGCCCTGGATGAGGTTCAGGGCCAGGAGCGTGGCGATCA
CCCCAGCTTTCGTCGCCATGCCCACCCACCGCACTGCACCTGCAGATCGATCTCGATCTATGGCCTGCCCTCTACCTAGCTTTGCTTGCTAGCCAGTGTA
TTCAGATACATCTATCGACCAAGGGGTGCACTCATATTTATAATAGGATCGGAGGTACTAGCGGAGTACCTTCAATTACTTAACCAGCTACCACATCACT
TAACTAATTAATTAACTAATCGGATTTTAACTAGGATTTCATCTTAGGTGCAGCTCACATCACTACAGCGTAACTACTACTAGTGACCTAGCTAGCTAGC
TGGCCTGGAGTACATTAATTCATTGGAGTATAGTGCTACTAGCTAGTGGGCTTTTGGTAGCTTAGCTGGCCG