Detailed information on CNT30552993


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39176|ERLI1_ARATH, E-value = 2e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30684877Oryza glaberrimaTriticum urartu29.326.3486.83167forward
CNT30369831Oryza glaberrimaOryza glumipatula95.6188.9199.45545forward
CNT30105280Oryza glaberrimaOryza longistaminata94.7486.5493.15540forward
CNT30100768Oryza glaberrimaOryza rufipogon101.0582.0596.35576forward
CNT30575695Oryza glaberrimaOryza barthii10089.7699.47570forward
CNT30116368Oryza glaberrimaOryza nivara10091.4997.37570forward

Expression of CNT30552993

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MPRMLARRAVQRHTAASRSARPWMRLQHGCRGGVPSCTFISPFSTFAHTPSFSVSIGHLPPPPPPPLPPP

>peptide 2 (38 aa)
VRTDAYTMRSIEYKLINQLCRYTYTSRRMKHALITSWN*

Sequence

>CNT30552993
GTACGTACTGATGCATATACGATGAGATCCATCGAGTACAAATTAATTAATCAATTATGCAGATACACATATACAAGTAGACGAATGAAGCATGCTTTAA
TTACGTCGTGGAACTGAATCATATGCATGCATATATATCTCATTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGATGATTTGAAC
AAGGAACAAATTAGACATAGATAGATATATAGTTGTACGTGGCCTGGTGGTCGTTCTTCGTACGTTCTTGTGTGTAGCAAGCAGTGAAGTAGAATGGAGC
AGCAGCTATATTAGTTGCTGCACTGGAAGCCGGAGGGGACGGAGCGGCCGCAGTAGTTGATGCCAAGGATGTTGGCGCGGAGGGCGGTGCAGAGGCACAC
GGCGGCCTCAAGGTCGGCGAGGCCCTGGATGAGGCTGCAACACGGCTGCCGCGGCGGCGTCCCCAGCTGCACGTTTATCAGCCCATTCAGCACGTTCGCG
CACACCCCCAGCTTCAGCGTGTCGATCGGGCATCTTCCTCCTCCCCCGCCGCCGCCGCTTCCTCCTCCTC