Detailed information on CNT30552961


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 2e-133

BLAST vs NONCODE:
NONBNAT005173, E-value = 2e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30116796Oryza glaberrimaOryza nivara88.63101.9597.77943forward

Expression of CNT30552961

Peptides detected in this lncRNA

>peptide 1 (31 aa)
ELGPAPIYWVDAQIGIVLAGFVVDPIITIHH*

>peptide 2 (94 aa)
MVRWLAPSRSCRCAHLPGTKLVAYAQALLATGSATWSKRFSMGPLPVTMAWTKKPNMENMARRPFLSSFTLSSAKAPPGYTLSRPSPSGPPPTR*

>peptide 3 (65 aa)
MHCCNCNCRVGAWLLQVYTWYVGWHHLDRVVVLTCRGRSWWRMPRRCWRRGRRRGRRGSRWGPCR*

>peptide 4 (37 aa)
MRRRLGWFFVVCGGDGRRGRGDLYTAYEWRSGGLVDAR

Sequence

>CNT30552961
TGAACTGGGTCCCGCACCGATTTATTGGGTCGACGCACAAATTGGCATCGTTTTAGCTGGCTTCGTTGTAGATCCTATAATAACGATACATCATTAATTC
GATCATCCCTTGGATGCGGCCTGCGGCTTACATTAAATCTCGATCCAAAGAAGCAAAGATGATGACAGACAGAAATTAATTAAGCTAGAAATCTCCTCGA
TCGATCACACACACACACACACAATTAAGGTACATACATACATGCACTGCTGCAACTGCAACTGCAGGGTCGGTGCGTGGCTACTACAAGTGTACACATG
GTACGTTGGTTGGCACCATCTCGATCGTGTCGTTGTGCTCACTTGCCGGGGACGAAGTTGGTGGCGTATGCCCAGGCGTTGTTGGCGACGGGGTCGGCGA
CGTGGTCGAAGAGGTTCTCGATGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTC
CTTCACCTTGAGCTCGGCGAAGGCGCCGCCTGGGTACACCTTGTCGAGGCCCTCGCCGAGCGGGCCGCCGCCGACGCGGTAGCCCTCGACGAATCCCATG
AGCACCACCTGGACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTCCCCAGGTAGTCGAGCCCCCCCTCGGAGAAGATCTGCGCGC
CGGCCTTGAACCACACCGCCTCCCCGAACTTCACCCCGTTCTTGGACAGGATCTCCGGGAAGACGCAGCCCAGCGCCCCCAGCATCGCCCACCGCGAGTG
GATCACCTCCAGCTCCCTGTTCCTCGCGAACGTCTCCGGGTCGGCCGATAGCCCCGCCGTGTCCCACCCGTAGTCTCCCGGGAACTCTCCGGTCAGGAAG
CTGGTGGTCTGGTGCAGCGCCGACGCGGCCATCGTTCTAACGAGGGCGATGCGGCGGCGGTTGGGTTGGTTTTTTGTGGTGTGTGGTGGAGATGGGCGGC
GCGGGAGGGGAGATCTTTATACGGCGTACGAGTGGCGGAGCGGTGGACTGGTGGACGCGCGGCG