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Detailed information on CNT30552945


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692428Oryza glaberrimaOryza sativa48.8344.9297.99398forward
CNT30524833Oryza glaberrimaPhaseolus vulgaris22.2111.9681.22181forward
CNT30448528Oryza glaberrimaSaccharum spontaneum23.4412.3191.62191forward
CNT30361641Oryza glaberrimaSorghum bicolor24.7917.1694.06202forward

Expression of CNT30552945

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MRVPLLGHTYRSRSCGGFFFFSFVLTRRCGYAHARRAAVACGGRWISTGRERGGAPGRGGWGR*

>peptide 2 (53 aa)
MPSTPRRSVLKTVWQTWREMSGRMLKRVRLNSCTAAGTSAPTARGAYPVAHAE*

>peptide 3 (36 aa)
AHGVVHQSDHHQSASEKIQRKIIVCTKHSSNVIFFQ*

Sequence

>CNT30552945
GCCCACGGCGTCGTCCATCAATCAGACCATCACCAATCGGCGAGTGAAAAAATACAAAGAAAAATAATTGTATGCACGAAGCACTCCAGTAATGTAATTT
TTTTCCAATAGAGTAAGGTAGGTAAAAATCGAGCACTAATGCTACAGTACACTCTCGGTCTTGGCAGGTCGCGCCGAAATATTTTCTAGGCCTGAGAAGA
GGAGGGTAAAATTGCAGTAAAATCCGACGCGGTAAAAAAAAAAAAACAGTAGAGGGATGCGTGTCCCCCTACTGGGCCACACGTACCGTAGCCGCAGCTG
CGGTGGTTTTTTTTTTTTCTCCTTCGTTTTGACTCGTCGCTGCGGCTACGCGCACGCGCGGCGCGCCGCGGTGGCGTGCGGGGGGCGTTGGATTAGTACC
GGGCGAGAGCGCGGCGGAGCACCTGGGCGAGGAGGCTGGGGGCGCTGAGGAACTCGACGGTGGTGCGGCCGCCGAGGTGGGCCTTGAGGTAGGCGGCGAC
GGAGGCCGGGACGGAGACGTCGCGGGTGGTCTGGACGACGACGCAGGGGGCGCGGACCATGCCGAGCACGCCGCGGAGGTCGGTCTTGAAGACGGTCTGG
CAGACGTGGAGGGAGATGTCCGGGCGCATGTTGAAGAGGGTGCGGCTGAACTCCTGCACCGCCGCCGGCACGTCGGCGCCCACCGCCAGAGGCGCGTACC
CCGTCGCCCACGCCGAGTAGTTCGCCCCCATCGCGTCGAACACCTGCTGTATCTCCTCCAGCTCGAACCCGCCGTGGTAGTCGCTGTCGTTCAAGAACCT
GCACACACATGTCCG