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Detailed information on CNT30552938

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691929	Oryza glaberrima	Oryza sativa	86	100	99.58	479	forward
CNT30100783	Oryza glaberrima	Oryza rufipogon	53.86	84.27	99	300	forward
CNT30575585	Oryza glaberrima	Oryza barthii	60.68	74.61	100	338	forward

Expression of CNT30552938

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MKSKRMPMLLDTPLPFLKAFLNPPDALMCSQTGSGQQQ*

>peptide 2 (48 aa)
MPRKRASGGRRSKHTLSISSKRYYQITRYQITVQDMYTRTNSDRSWMV*

>peptide 3 (32 aa)
PNMIRSSIGYSHNCIALLFRSSSGHNHIRELG*

Sequence

>CNT30552938
CCAAATATGATCAGAAGTAGCATTGGATATTCACACAACTGCATAGCATTATTGTTCAGAAGTAGTAGTGGGCATAATCACATAAGAGAACTTGGATAAA
AGCTCTTTAAATTTACAGAAGGCAACAGAGATGAATTTATTGACGCTTGTACACTCAGAACGGCGAAACACGGGCTGATAGCAAAGCTACAACAAACGAA
TATGCCAAGAAAACGTGCATCAGGAGGCAGGAGGTCCAAACATACATTATCCATCTCCTCAAAACGATACTACCAGATCACCAGATACCAAATCACCGTA
CAAGACATGTACACAAGAACGAACAGCGATCGGAGCTGGATGGTGTAGAGAAGCGCTGAAGCGGTGGCGCCTACAGAAAGTTCAGCACCAGGGCCCAGAC
AGGGTAGATGAAGAGCAAGAGGATGCCAATGCTGTTGGACACTCCGTTGCCCTTCCTGAAGGCGTTCCTGAATCCACCTGACGCCCTGATGTGCTCGCAA
ACAGGTTCGGGGCAACAGCAATGAGAAGGATCACAGCACCAGGCAGCTCTAACCAAT