Detailed information on CNT30552882


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30100341Oryza glaberrimaOryza rufipogon10054.1295.56473forward
CNT30575438Oryza glaberrimaOryza barthii73.7853.5399.71349forward

Expression of CNT30552882

Peptides detected in this lncRNA

>peptide 1 (49 aa)
KPGAWSGGGKRRPVGEAAACARCLRRIEHSSWWKEPIEELSKRTVVPDY*

>peptide 2 (65 aa)
ARRVERWRQAAAGGGGGCVRSVSASHRAFELVEGAYRGAEQANCGSRLLISWWLKISDGRYLKEI*

>peptide 3 (39 aa)
SQARGAVEASGGRWGRRLRALGVCVASSIRAGGRSLSRS*

Sequence

>CNT30552882
AAGCCAGGCGCGTGGAGCGGTGGAGGCAAGCGGCGGCCGGTGGGGGAGGCGGCTGCGTGCGCTCGGTGTCTGCGTCGCATCGAGCATTCGAGCTGGTGGA
AGGAGCCTATCGAGGAGCTGAGCAAGCGAACTGTGGTTCCCGATTACTGATTTCCTGGTGGCTGAAAATCAGCGACGGAAGGTATCTCAAAGAGATTTGA
ATAGCTATTTTAACCGTGGGTGATGTGCCACCAACCCCAACTACTTGTGGCAATGGAATTGTTGCGGTGGAAGAGGCTGCGCTGAACAGGTAGAAGGGGT
CGTGGAAGTACAATTGGGTTCATTTCATATTGCTGGACGAGCGGAAGAGGTATGTACTGGCGAGCCCGGAGGAGAGGTCCTTGGTTGGGGTGATTACCAG
GGCGATGCCATGGCTACCGACGCCGGGGGAGGCAGTGATGATGCCGAACACAAAGGACGCCGAGAAAGACCGC