Detailed information on CNT30552865


BLAST search results

BLAST vs Swiss-Prot:
sp|P0C549|CATA1_ORYSI, E-value = 7e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520085Oryza glaberrimaSetaria italica38.386.0290.38104forward
CNT30185318Oryza glaberrimaSecale cereale61.2512.1390.36166forward
CNT30304171Oryza glaberrimaTriticum aestivum64.5824.4192175forward
CNT30243876Oryza glaberrimaAvena sativa64.5823.2492175forward
CNT30139766Oryza glaberrimaLolium perenne52.428.9894.37142forward

Expression of CNT30552865

Peptides detected in this lncRNA

>peptide 1 (35 aa)
STRGSCRRRWSRRGPGWRGCGSCRRRSWPRRPSSS*

>peptide 2 (88 aa)
PLGEVAGGDGVVEVLGGVAVVLAADDRGLVVHQAADAAGGLPVELDVPGLAVAGDEGVEALGVVGQEVEDPPVLLDMGARVGLEGVDDV

Sequence

>CNT30552865
TTCCACTCGGGGAAGTTGCCGGCGGCGATGGAGTCGTAGAGGTCCTGGGTGGCGTGGCTGTGGTTCTTGCCGCCGACGATCGTGGCCTCGTCGTCCATCA
AGCAGCTGACGCCGCAGGTGGGCTTCCAGTGGAACTTGACGTACCTGGCCTTGCCGTCGCGGGTGACGAAGGTGTGGAGGCTCTCGGGGTGGTGGGACAA
GAAGTCGAAGACCCTCCAGTACTCCTGGACATGGGAGCGCGGGTTGGGCTTGAAGGCGTGGATGACGTCGG