Detailed information on CNT30552847


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30100403Oryza glaberrimaOryza rufipogon62.5344.7296.24559forward

Expression of CNT30552847

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MLLIRVSTHIQIHDVIHVSLFRMFCLHYSRTMRSYGSVIWVFIHDP*

>peptide 2 (74 aa)
RIAPVALAAAPPALCRHRRCSCLRRRRRWCSRRRLPQPSSSTAGRWKEGEKAEKNMKEGKKGKFDRRREIWGIW*

>peptide 3 (64 aa)
ENRSCSPSRRTSCALPPPPLFLSSPAPPLVQPSPVATAVVVHSRSLEGGREGREEHEGRKEGEI*

>peptide 4 (42 aa)
MALTLCYLFVFRPIFKFMTLFMFHYSGCSVYIIQEPCVAMGV*

Sequence

>CNT30552847
GGAGAATCGCTCCTGTAGCCCTAGCCGCCGCACCTCCTGCGCTCTGCCGCCACCGCCGCTGTTCCTGTCTTCGCCGGCGCCGCCGTTGGTGCAGCCGTCG
CCGGTTGCCACAGCCGTCGTCGTCCACAGCCGGTCGTTGGAAGGAGGGAGAGAAGGCAGAGAAGAACATGAAGGAAGGAAAGAAGGGGAAATTTGATAGA
AGAAGGGAAATTTGGGGAATTTGGTGAATATTTCCAAATTCTTCGTTTTTCTTATACATTAGTACTGCTGGGTGTGGAGGGTTCCAACGTTGGAGGAGTT
GAGTCGGAGTATCGAAGGAGTTAAGGCAAGTACAAGACGGACTTATGTGATGGACAAACTGAGTTGTTTTGTTTGGCTTTACTTACATAATTATTATTCA
ATTGCTTGATATTACTGATTGTATGGCTCTGACGTTATGCTACTTATTCGTGTTTCGACCCATATTCAAATTCATGACGTTATTCATGTTTCATTATTCC
GGATGTTCTGTTTACATTATTCAAGAACCATGCGTAGCTATGGGAGTGTAATTTGGGTCTTTATTCATGATCCTTGAGAAGCGCTGATCACGTTTGCTCG
GCTTACCGGTACCTAATGACATCGATCGGCATGGGACGGGAGTAGCACCCTTGGACTACATATTATTATTGCACACAACTGAAATTTAGTTTTAGACTAT
ATTTTTTTGCTCAGCATAAGTTTTGCATAGAACTTGTAAAGGTCATTTAAGGTTCTGAGCCTTATTTTTCACGTGGGGTTTGTGGAGCTAGGATGGTTTG
GATTGTGTGGATTATATCGGTATTGACCGTTTATTTTTAGGGGAGACTTTGCCGAAATTTCTAATAATTTTAGGACTTAGTTTTTTAGTGTATT