Detailed information on CNT30552841


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691368Oryza glaberrimaOryza sativa83.7343.6399.47952reverse complement

Expression of CNT30552841

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MFRGCRSDGCDLGTVGSIGGIVVRFWDWMLVLMIGGNFYG*

>peptide 2 (74 aa)
ILQADGDVTARDSSHHPTAINTSPLVSSSPRISSTPEKFLPNLARLSSSNRILSRPQGTLLLLSSLRFDSISDG*

>peptide 3 (29 aa)
MLRTILEYHVTICSNIMLQSVVHLYNPLW*

>peptide 4 (31 aa)
MFRSTVPLLIELLVPWVGANTGFNMLYLFCV*

>peptide 5 (80 aa)
DSPSRRRRHGTGLLPPPNRHKYQPPRLLLSSHQLHPRKISPQSREALVVESNPLASSRYAASPLLASFRFDFGRVRLFCC*

Sequence

>CNT30552841
GGATTCTCCAAGCAGACGGAGACGTCACGGCACGGGACTCCTCCCACCACCCAACCGCCATAAATACCAGCCCCCTCGTCTCCTCCTCTCCTCGCATCAG
CTCCACCCCCGAAAAATTTCTCCCCAATCTCGCGAGGCTCTCGTCGTCGAATCGAATCCTCTCGCGTCCTCAAGGTACGCTGCTTCTCCTCTCCTCGCTT
CGTTTCGATTCGATTTCGGACGGGTGAGGTTGTTTTGTTGCTAGATCTGATTGGTGGTTAGGGTTGTCGATGTGATTATCGTGAGATGTTTAGGGGTTGT
AGATCTGATGGTTGTGATTTGGGCACGGTTGGTTCGATAGGTGGAATCGTGGTTAGGTTTTGGGATTGGATGTTGGTTCTGATGATTGGGGGGAATTTTT
ACGGTTAGATGAATTGTTTGATGATTCGATTGGGGAAATCGGTGTAGATCTGTTGGGGAATTGTGGAACTAGTCATGCCTGAGTGATTGGTGCGATTTGT
AGCGTGTTCCATCTTGTAGGCCTTGTTGCGAGCATGTTCAGATCTACTGTTCCGCTCTTGATTGAGTTATTGGTGCCATGGGTTGGTGCAAACACAGGCT
TTAATATGTTATATCTGTTTTGTGTTTGATGTAGATCTGTAGGGTAGTTCTTCTTAGACATGGTTCAATTATGTAGCTTGTGCGTTTCGATTTGATTTCA
TATGTTCACAGATTAGATAATGATGAACTCTTTTAATTAATTGTCAATGGTAAATAGGAAGTCTTATCACTATATCTGTCATAATGATCTCATGTTACTA
TCTGCCAGTAATTTATGCTAAGAACTATATTAGAATATCATGTTACAATCTGTAGTAATATCATGTTACAATCTGTAGTTCATCTATATAATCCATTGTG
GTAATTTCTTTTTACTATCTGTGTGAAGATTATTGCCACTAGTTCATTCTACTTATTTCTGAAGTTCAGGATACGTGTGCTGTTACTACCTATCTGAATA
CATGTGTGATGTGCCTGTTACTATCTTTTTGAATACATGTATGTTCTGTTGGAATATGTTTGCTGTTTGATCCGTTGTTGTGTCCTTAATCTTGTGCTAG
TTCTTACCCTATCTGTTTGGTGATTATTTCTTGCAGA