Detailed information on CNT30552743


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369606Oryza glaberrimaOryza glumipatula21.293.1899.47752forward
CNT30105352Oryza glaberrimaOryza longistaminata26.6172.2398.73944forward
CNT30100218Oryza glaberrimaOryza rufipogon15.59101.6598.37553forward
CNT30575179Oryza glaberrimaOryza barthii41.0572.5599.791456forward

Expression of CNT30552743

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVVSSDALSPWLRESVISSSLLLLLGRRAI*

>peptide 2 (29 aa)
MNSVLAYYMKSIHRTLQKQRTSHRYYEGD*

>peptide 3 (42 aa)
MFFWKMVSDSVASVSLISWTDSISKICGSLSVRLSSVACSSH*

>peptide 4 (40 aa)
MILVQHPQCYLFLLVQAPLLAHHQLAHLLVNWLLELSPQQ*

>peptide 5 (35 aa)
MCLMGSFSCFTIYSVTYFFWFKILFLHIIDWLTCY*

>peptide 6 (35 aa)
MFCSETSSEASTLLTSVDPISFVSHVVGLSSWFCF*

>peptide 7 (32 aa)
MLLQHYQFCGNSSRGLVGDFFSFSGFNFLCLF*

>peptide 8 (53 aa)
MLKKIMEQQVQVISYQLGCHGIFRHIRRSIQWGRCHKSQCFFRTSKGLLNLIE*

>peptide 9 (51 aa)
MAKRISHLFFIAFIARTPCHLNYVLKEFWFQRVLLLKLRPLESSIFLQLNP*

>peptide 10 (41 aa)
ELSSQKEQHCYLHLQYLQLRLVIPLLECQNLVLLLLQSLVD*

>peptide 11 (68 aa)
MTVICSKRIPHDQLLWRRKIPSWQIQSAMLDPALQLLIKQSKVNPVKVKKSTGRHLQCCFQRLNQMIF*

>peptide 12 (65 aa)
MWLDYLLGFASERWHHPFDEMFHSNQQVQVSSFLLIPAPALIVYQQLTHFQREQHGLYGNLPLFQ*

>peptide 13 (70 aa)
MMSRMLGNTYHQPLSEMSQHRTQPISLAGNIVQRLMFCFLALFSFAPWNIYSRHPVVPLPPSMYMSMCCC*

>peptide 14 (29 aa)
MLGPERKKGASVFLERKKKGKYWMKGTRV*

>peptide 15 (29 aa)
MASSGTFDDLYNGEGVTKANVSSGHQKVC*

Sequence

>CNT30552743
GAGCTATCTTCTCAGAAAGAGCAGCACTGTTATTTACATCTTCAGTATCTTCAATTACGACTGGTGATTCCTCTGCTTGAGTGTCAGAACCTGGTTCTTC
TTTTGTTACAGTCTCTTGTGGATTGAACTCCTCAGAGCTAGAAACATTATGAGAGGGGATGACTCCTTGAGGTTCAAGAACTTCAGTTTCCTTGAATTCA
ACTGATTCTTGTTCCTGAAGTTGCTGGTAACCAACATTTTGTTCAATTGTTGCATTATTGTGTGTTTCTATTTCCTCTACACTAGCAACTCTGCTATCTT
GGAGTGTTGGTTCAGGTACAGTTGGTGCAGTGTCCCTCATCTCTTCTGATGATTCTGGTTCAGCATCCACAGTGTTACTTATTTCTTCTGGTTCAAGCTC
CTTTACTTGCACATCATCAGTTGGCTCACTTGCTAGTAAATTGGCTTCTTGAGCTGTCTCCTCAACAATAGCCCCACTGCTTTGATCAGGTTCTTTTGCT
GTAGCATTTTCTTCTGGGACAGACTCCTCGGAAGTAGGAACAATGTTTTTCTGGAAAATGGTTTCAGATTCAGTAGCTTCAGTGTCTTTAATATCCTGGA
CTGATTCCATTTCCAAAATTTGTGGTTCACTTTCTGTTAGACTTTCCTCTGTTGCTTGCTCCTCACATTGAGTAATATTACTTTGGTGGGCAATTGCTTG
ATCTTCAGAGGCTTCAACACTGCTCTCTACCTCACCTGTCCAATTATCTTCAACAGCAGCATGTGTTTGATGGGAAGCTTCTCCTGTTTCACCATCTACA
GTGTTACTTATTTCTTCTGGTTCAAGATCCTTTTCTTGCACATCATCGATTGGCTCACCTGCTACTAAATCGGCTTCTTGAGCTGTCTCCTCAACAATAG
CCCCACTGCTTTGGTTGGGTTCTTCTGTTGTAGCATTTTCTTCTGGAACAGACTCCTCAGAAGTAGAAACAATGTTTTGCTCTGAAACGAGTTCAGAGGC
TTCAACACTGCTCACTTCGGTTGATCCAATCTCATTCGTCTCACATGTGGTTGGATTATCTTCTTGGTTTTGCTTCTGAGAGATGGCATCATCCTTTTGA
TGAAATGTTCCACTCAAATCAACAAGTTCAGGTTTCTTCATTTCTTCTGATTCCAGCTCCTGCATTGATTGTGTATCAGCAGTTGACACACTTTCAGAGG
GAGCAGCATGGCTTGTATGGAAACCTGCCTCTGTTTCAATAGGTTCAGGGCTCTTGATTTCTTCTGATTCAAGACCCTGCAGTTGCAATTCCGCAATATT
CTCACTTGTCAGCACATTGTTTTCTTGTCCTTCGTCATCGACAGTTACCACATTGGATGCTTCTACAACATTATCAGTTCTGTGGAAACAGCAGCAGGGG
GTTGGTGGGTGATTTCTTCAGTTTCAGTGGCTTCAATTTCCTTTGCCTCTTCTAGTTGGCTCTCTTGTAGTCGCATCATCTTCTGGAGTTTTCTCCCCAC
AAGTGGCCACATTGCTCTGATGGCAAGTTTCTTCAGCTTTTACAGACAAACTATCATTGGTTTCTAAAGCTGGTTGTTGATTCAGAGCTTCTTGATCATC
AACTGACGCCTCCTCGGCTTGTTCAGTTTCAGGCAAATCAGATTCTTTGCTTTCAGCTCTCTTTGTGGTCAAGATAAGCAGTATCATCTTCTTTAGCCGG
ATCATCTGTTTCTTTGTTTCCTGGAACGGTGTCAGAGTCACCCACATTAGGCTCCAGAGGAGACTGGATTCCAGCCGGCGCTTCAGCTAGAACCTCATCG
GCAGGAATATCTGTCATGATTGCAGGTTGTGCTTCCTTGCTTTCTTTTGATGAATCCAGATCTTGAGCATCAACTGTTTGCTCAATAGCATCATCAGTTT
TACAAATTTCTTCCTGCACCATGGTGTCATTCGTTACATGACCTTCAACATCTTGTTGGCCATGATCCTTGGCCTCTGCATTCTCACATTTGAGAATGGT
GGTATCTTCTGATGCACTCTCTCCATGGCTAAGAGAATCAGTCATCTCTTCTTCATTGCTTTTATTGCTCGGACGCCGTGCCATTTAAACTATGTTCTGA
AGGAATTTTGGTTTCAGAGGGTGCTTCTACTAAAACTTCGTCCTCTGGAATCTTCAATATTCCTTCAGTTGAACCCATGATTGTTTAGGAACACAAATGA
ACTCAGTGCTGGCATACTACATGAAGAGCATCCATAGAACCCTTCAAAAGCAAAGAACATCCCATAGATACTATGAAGGAGATTAACATGAAGAGATCAT
GGAACAAGAAGTCACGGTGATGATTTTCCTTGCGAACTGGGCATGATACATATATGCTCAAGAAGATCATGGAGCAACAAGTGCAGGTCATCTCATACCA
GTTAGGCTGCCATGGCATCTTCCGGCACATTCGACGATCTATACAATGGGGAAGGTGTCACAAAAGCCAATGTTTCTTCAGGACATCAAAAGGTTTGCTG
AATCTAATCGAGTGAAAGGAGCAACACGATGAAAGTAACTTCTCCTCTGATATAATGGTTTTGTGTTAAGTCCAGGTATAGGATCACCAACAGTTTGTAA
ACCTCATATACTTCACCATGAGCTCACTGTTTAAACATCCAGAAGTATGGTAGCCTTGACACCTGCTGACATTGCTCATAGAGGGCCTAGTTTCTGAAGA
CTGCAGAGCCACAGGTACAGATAAAGGAGGTGCATGCCCCCTGAATATTCAATCAGTCAAGTGGCTGCTGATGACAGTGATCTGCAGCAAAAGAATTCCA
CATGATCAACTACTTTGGAGAAGGAAAATACCAAGTTGGCAAATCCAAAGTGCCATGCTGGATCCAGCACTCCAGCTACTGATCAAACAATCCAAAGTTA
ATCCTGTCAAAGTTAAGAAATCCACCGGCCGTCACCTGCAGTGCTGCTTTCAGAGACTAAACCAGATGATTTTCTGAAAACCAGAGGCAGGTGGTGTTTG
TCATGTATTATTCCATCATTATCACTGCGCCGAAAGAGAGAAATCAATGGAGATAGCCATGCGAAGATGATGTCACGGATGCTTGGAAATACTTATCATC
AGCCTCTATCAGAGATGAGTCAGCATCGTACGCAGCCCATATCATTGGCTGGAAATATTGTTCAGAGGTTGATGTTTTGTTTCCTGGCACTGTTTTCTTT
TGCTCCCTGGAATATATATAGCCGTCACCCTGTGGTCCCACTCCCACCGTCTATGTACATGTCAATGTGTTGCTGCTAATTAACTAGCACAGCACCATCT
CCATAAGCTTTTTTGCATTTGTGAAAACAAAAATTCTGATCATGCAAAACAGAAAAGAAAAATGAGGAAATGTTAGGTCCAGAAAGAAAGAAAGGAGCTA
GTGTTTTTCTTGAGAGAAAAAAAAAAGGAAAATATTGGATGAAAGGAACAAGAGTATAGAATATATCTGACCTTGTGATTGGAAACAAACATGCAACAGC
ACTTAGGGAGGCACCGGCCGTGCAAAAGCCATCTTGTCATGTTGTGC