Detailed information on CNT30552704


BLAST search results

BLAST vs Swiss-Prot:
sp|P0C549|CATA1_ORYSI, E-value = 1e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692136Oryza glaberrimaOryza sativa47.2411.1989.05137forward
CNT30519927Oryza glaberrimaSetaria italica56.219.590.8163forward
CNT30616919Oryza glaberrimaSesamum indicum23.4521.0588.2468forward
CNT30223144Oryza glaberrimaHordeum vulgare34.1446.786.8799forward
CNT30592095Oryza glaberrimaMusa acuminata22.7622.3789.3966forward
CNT30663726Oryza glaberrimaTriticum dicoccoides45.1715.8486.26131forward
CNT302263Oryza glaberrimaZea mays47.9312.4486.33139forward
CNT30715065Oryza glaberrimaMalus domestica golden21.384.3687.162forward
CNT30348307Oryza glaberrimaEragrostis tef56.5510.0188.41164forward
CNT30369978Oryza glaberrimaOryza glumipatula47.2418.2489.78137forward
CNT30575497Oryza glaberrimaOryza barthii47.2410.9389.78137forward
CNT30116279Oryza glaberrimaOryza nivara39.665.7992.17115forward
CNT3050211Oryza glaberrimaCucumis sativus22.4117.2986.1565forward

Expression of CNT30552704

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MPTSSKRKKKVWRLSGWWDKKSKTLQYSWTWERGLGLK

>peptide 2 (95 aa)
DEQLPLGEVAGGDGVVEVLGGVAVVLAADDRGLVVHQAADAAGVGVDAEAVHVAVIGGDADVVEEEEEGVEALGVVGQEVEDPPVLLDMGARVGLE

>peptide 3 (39 aa)
GRTASTRGSCRRRWSRRGPGWRGCGSCRRRSWPRRPSSS*

Sequence

>CNT30552704
GGACGAACAGCTTCCACTCGGGGAAGTTGCCGGCGGCGATGGAGTCGTAGAGGTCCTGGGTGGCGTGGCTGTGGTTCTTGCCGCCGACGATCGTGGCCTC
GTCGTCCATCAAGCAGCTGACGCCGCAGGTGTAGGTGTTGACGCCGAAGCCGTCCATGTGGCGGTAATCGGCGGGGATGCCGACGTCGTCGAAGAGGAAG
AAGAAGGTGTGGAGGCTCTCGGGGTGGTGGGACAAGAAGTCGAAGACCCTCCAGTACTCCTGGACATGGGAGCGCGGGTTGGGCTTGAAG