Detailed information on CNT30552698


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30587177Oryza glaberrimaMusa acuminata4.6721.0485.5169forward
CNT30595765Oryza glaberrimaOryza meridionalis72.1587.0197.931065forward
CNT30107393Oryza glaberrimaOryza longistaminata47.1550.1898.13696forward
CNT30575449Oryza glaberrimaOryza barthii78.3210099.911156forward
CNT30603702Oryza glaberrimaOryza punctata33.1337.4188.96489forward

Expression of CNT30552698

Peptides detected in this lncRNA

>peptide 1 (79 aa)
YLFASPPPPGATCVAAFASLPRPHAAPRAPARARARAPSSRRVRRPDPAHAPPPFEPPSPAPPRATARRSRTDLVNSPP*

>peptide 2 (76 aa)
MKIVPSVLIMKAAHVNCLVHPDHLLLFTLIRLRRLYIVYWLPLLNVSLITHDMLAWKGSFELIMRFAGISLGMPSE*

>peptide 3 (75 aa)
DISSPLLLRRERHVSRLLLRFHGHMPRHGHPRARAPARRPHAASAAQIRRTLLPLLSRHRRHRRARRRGAAAPIS*

>peptide 4 (55 aa)
ISLRLSSSAGSDMCRGFCFASTATCRATGTRARARPRAVLTPRPPPRSGARSSPF*

>peptide 5 (45 aa)
MPFSASSRRPLPSTVPVRRARGFSDSCKGTVTSLWQQLHILQENL*

>peptide 6 (34 aa)
MRLNNICLLLEGKRCMTVLKQMKNSSFYEVNFCC*

Sequence

>CNT30552698
GATATCTCTTCGCCTCTCCTCCTCCGCCGGGAGCGACATGTGTCGCGGCTTTTGCTTCGCTTCCACGGCCACATGCCGCGCCACGGGCACCCGCGCGCGC
GCGCGCCCGCGCGCCGTCCTCACGCCGCGTCCGCCGCCCAGATCCGGCGCACGCTCCTCCCCCTTTTGAGCCGCCATCGCCGGCACCGCCGCGCGCGACG
GCGCGGCGCAGCCGCACCGATCTCGTGAATTCCCCTCCCTGACCACTCTCCCGGCCCCGGCCCCGGCCACCACCTAAATCGCAATGCCTTTCTCCGCTAG
CTCCCGCCGTCCCCTCCCCTCGACGGTGCCGGTGCGGCGCGCGCGTGGTTTCTCAGATTCATGCAAGGGGACGGTGACAAGCTTGTGGCAGCAACTGCAC
ATCTTGCAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAA
CTATCAAGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGACAAAATTAAAGTAATAAACATGTCTGACCAACAAACACAATGATTAATAA
CAAAACTCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGTTATAATATGAAAACTAGATGGAGGCAGTGCCACCAGGCAATTGCAAATGA
ACTCATCAACATATGAACATCTAGCAAGGTGAGTAAAGTCTGGTAAGGTGCTAGATGAGTAAAGTCTGGTAAGGAAGTCAAACATCTAATATGTATGAAA
ATTGTTCCTAGTGTTCTTATAATGAAGGCTGCACATGTAAACTGTTTAGTCCATCCTGATCATCTATTGTTGTTTACTCTGATCAGATTACGTCGTCTCT
ACATTGTGTATTGGCTTCCACTGCTGAATGTTTCTCTTATTACCCATGACATGCTTGCTTGGAAGGGCAGTTTTGAGTTGATCATGAGGTTTGCAGGAAT
TTCTCTAGGAATGCCCAGTGAGTGATCCTGTAAATTTTGGAGTTGATTGTTCATCAGAATAGCACTATAATTTTCCTGTCACCTGTGCTTTGGCAGCGGA
ACGTTCATTGTCCCATGCTACTCAGCTTTGTACTTTTGTAAATCAAATGAGACTGAATAATATATGTTTACTTTTGGAAGGAAAAAGATGTATGACTGTT
CTCAAGCAAATGAAAAATTCCAGCTTTTATGAAGTTAATTTCTGCTGTTAACATGCTACCTAGTGCATTCCTAGAATCCTAGTTAGTGTCTTAAACCTTG
GTTGATGAGCGTTCCAAGCTGCTTATCCCTATTCAGCAGAATGCAAGGTTTGTAGGGATTACTATTTGAGAAAGGAAAACCAGTGCCTAGGTGCTTTCTT
GAGCATGTAGTTTACTACTATACCACCTATGTCCCAAAATATAACCTGGACATTTCCTGTCTAGATTCATAGTCTA