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Detailed information on CNT30552690


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 9e-35

BLAST vs NONCODE:
NONZMAT001340, E-value = 1e-105

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Oryza glaberrimaOryza sativa31.9419.198.16489forward
CNT30678637Oryza glaberrimaSetaria viridis25.0294.3397.65383reverse complement
CNT30524663Oryza glaberrimaSetaria italica29.3977.3298.67450forward
CNT30641615Oryza glaberrimaNymphaea colorata29.4681.4189.8451forward
CNT30549212Oryza glaberrimaIpomoea triloba63.6232.2891.68974forward
CNT30513456Oryza glaberrimaJuglans regia48.3323.3192.03740forward
CNT30270599Oryza glaberrimaChenopodium quinoa65.5861.6792.031004forward
CNT30730494Oryza glaberrimaCorchorus capsularis55.3996.3692.1848forward
CNT30630109Oryza glaberrimaVigna unguiculata57.4127.8991.58879forward
CNT30196906Oryza glaberrimaPisum sativum21.6943.8695.18332forward
CNT30632746Oryza glaberrimaCapsicum annuum10.3921.9993.71159reverse complement
CNT3090649Oryza glaberrimaSolanum tuberosum44.8725.1395.63687forward
CNT30178555Oryza glaberrimaSecale cereale24.0443.7197.55368forward
CNT30291213Oryza glaberrimaTriticum aestivum24.0410.5997.28368forward
CNT30220801Oryza glaberrimaHordeum vulgare23.9794.5998.37367forward
CNT30396824Oryza glaberrimaTriticum turgidum49.3174.9897.75755reverse complement
CNT30569398Oryza glaberrimaActinidia chinensis43.3733.9891.57664forward
CNT30511593Oryza glaberrimaSolanum lycopersicum8.9521.0489.05137forward
CNT30442196Oryza glaberrimaAegilops tauschii55.1399.5398.58844reverse complement
CNT30657980Oryza glaberrimaTriticum dicoccoides26.1998.2897.51401reverse complement
CNT30460233Oryza glaberrimaSaccharum spontaneum54.8727.2398.33840forward
CNT303548Oryza glaberrimaZea mays67.4172.4798.061032reverse complement
CNT30646904Oryza glaberrimaRosa chinensis12.0266.1989.13184forward
CNT30205642Oryza glaberrimaHelianthus annuus61.5991.1192.9943forward
CNT30688674Oryza glaberrimaTriticum urartu54.0862.8798.55828forward
CNT30722943Oryza glaberrimaTriticum spelta24.0418.2897.55368forward
CNT30347837Oryza glaberrimaEragrostis tef46.839397.77717reverse complement
CNT30363261Oryza glaberrimaSorghum bicolor28.0933.7898.37430forward
CNT30620564Oryza glaberrimaCajanus cajan48.4714.3491.37742reverse complement
CNT30596725Oryza glaberrimaOryza meridionalis37.7516.7598.62578forward
CNT30354697Oryza glaberrimaLactuca sativa22.7349.2996.55348forward
CNT30410483Oryza glaberrimaPapaver somniferum71.4653.4793.331094forward
CNT30642274Oryza glaberrimaCannabis sativa37.7570.7591.7578reverse complement
CNT30319706Oryza glaberrimaAsparagus officinalis56.4330.0695.02864forward
CNT3036965Oryza glaberrimaCucumis melo46.6498.0891.6714forward
CNT30332809Oryza glaberrimaDioscorea rotundata17.0537.7796.93261reverse complement
CNT30150154Oryza glaberrimaBrachypodium distachyon62.2583.397.48953forward
CNT30104374Oryza glaberrimaOryza rufipogon71.6582.6198.271097reverse complement
CNT30581628Oryza glaberrimaEchinochloa crusgalli10.7147.9599.39164forward
CNT30497700Oryza glaberrimaDigitaria exilis17.1147.997.71262reverse complement
CNT30604015Oryza glaberrimaOryza punctata32.92104.3594.64504reverse complement
CNT30174498Oryza glaberrimaVigna angularis25.9378.6187.66397forward
CNT30551087Oryza glaberrimaOryza brachyantha20.31104.3691.32311reverse complement
CNT30115272Oryza glaberrimaEutrema salsugineum8.9528.1989.05137forward

Expression of CNT30552690

Peptides detected in this lncRNA

>peptide 1 (48 aa)
TRRYGAEVCNPCHTPRKSSNDLQQRGTCTRNRHRWVGREYLGVRDNSL*

>peptide 2 (77 aa)
MLIFPKSPHRREGLAPRCRLFATWSCRWFQGLGCSPINAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHL*

>peptide 3 (36 aa)
MSALSSDFPRASGSTAETATGSPPIRGWSDISMEIG*

>peptide 4 (35 aa)
PGATALKYVTHAILLGKARTTFNKGVPVPETDTGG*

Sequence

>CNT30552690
TACCAGGCGCTACGGCGCTGAAGTATGTAACCCATGCCATACTCCTAGGAAAAGCTCGAACGACCTTCAACAAAGGGGTACCTGTACCCGAAACCGACAC
AGGTGGGTAGGTAGAGAATACCTAGGGGTGCGAGACAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCTCTCGCA
AAAGGGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCATAAGACCATGTATGGGGGCTGACGCCTGCCCAGTG
CCGGAAGGTCAAGGAAGTTGGTGAACTGATGACAGGGAAGCCGGCGACCGAAGCCCCGGTGAACGGCGTAACGATCTGGGCACTGTCTCGGAGAGAGACT
CGGTGAAATAGACATGTCTGTGAAGATGCGGAATACCTACACCTAGACAGAAAGACCCTATGAAGCTTTACTGTTCCCTGGGGTTGGCTTTGGGCCTTTC
CTGCGCAGCTTAGGTGGAAGGCGAAGAAGGCCCCCTTCCGGGGGGGCCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTCGGATTCTAACCTTGTGT
CAGACCCGCGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCATGCAAAGGTTTCCTCGGGCCAGA
CGGACATTGGTCCTCTAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGATGAAAGTCGGCCTTAGTGATCCGACGGTGCCG
AGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACATGCTGATCTTCCCCAAGAGTCCACATCGACGGGAAGGTTTGGCACCTCGATG
TCGGCTCTTCGCCACCTGGAGCTGTAGGTGGTTCCAAGGGTTGGGCTGTTCGCCCATTAATGCGGTACGTGAGCTAGGTTCAGAACGTCGTGAGACAGTT
CGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTAGTGTACCAGTTATCGTGCCT
ACAGTAAAAGCTGGGTAGCCAAGTGCGGAGAGGATAACTGCTGAAAGCATATAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCTCCTCCGACTTCCCT
AGAGCCTCCGGTAGCACAGCCGAGACAGCGACGGGTTCTCCACCCATACGGGGATGGAGCGACATAAGCATGGAAATAGGATAAGGTAGCGGCGAGACGA
GCCGTTTAAATAGGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACGATTTGAACCTTGTTCCTACACGACCTGATCAA
ATCGATCAGGCACTTGCCATCTATCTTCATTGTTCAACTCTTTGATGAAAAGATGAAAAAACCAAAAAAAAAGCTCTGCCCTTCCATCTCTTGGATAGAT
AGAGAGGGAGGGCAGAGGCCTTTGGTGTCCC