Detailed information on CNT30552658


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XA61|TIP21_ORYSJ, E-value = 6e-80

BLAST vs NONCODE:
NONBRAT001055, E-value = 3e-14

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519799Oryza glaberrimaSetaria italica27.0430.2893.96182forward
CNT30376051Oryza glaberrimaArabidopsis thaliana20.3616.8381.02137forward
CNT30628730Oryza glaberrimaVigna unguiculata33.7350.979.74227forward
CNT30397893Oryza glaberrimaTriticum turgidum29.2730.9388.32197forward
CNT30589165Oryza glaberrimaMusa acuminata28.3841.790.05191forward
CNT30339028Oryza glaberrimaEragrostis tef13.5222.8189.0191reverse complement
CNT30364799Oryza glaberrimaSorghum bicolor31.6527.9989.2213forward
CNT30644098Oryza glaberrimaCannabis sativa21.2551.0782.52143forward
CNT3063260Oryza glaberrimaSelaginella moellendorffii13.0823.4786.3688forward

Expression of CNT30552658

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKFYNFDFPFQTTIAESDLLHVPCLTKRR*

>peptide 2 (64 aa)
MEPPLNGPAARMLAPTMKPIAMGAMVPSDPFFGSAAVAYTVYTSANVMTISITTPSSSLMPATPC

Sequence

>CNT30552658
GATAGATAGATAGATAGATAGATAGATTATCTTAGCCAGAAAAGGGACATGGCTTTCAAATTTCCTGGTACAAACCAAATCTAATGCAAATTGATCTTAT
CAATTGTGTCGATGAAATTTTACAATTTTGATTTCCCCTTCCAGACAACAATCGCAGAAAGTGACCTTTTACATGTACCGTGTTTGACAAAAAGAAGGTA
AACCGGAAAATACAAAGCCTGTGAACGTATCACACACGACGAATATCAAATCAAGCAAACGTACGATGCATGCAAACTGACACGGATACTTCAATTAATT
CGGTTCATCCACTTTTAAGCGTAGTCCTGGTCGGCAACGGGCTGGTATGAGCCGATGAACACGTCGCCGTACACGAGCCCGGCGAGGCCGCCGCCGATCA
GCGGGCCGACCCAGTAGACCCAGTTGCCAGCGAAGTTGCCGGCGGCGACGGCGGGGCCGAAGGAGCGCGCTGGGTTCATGGAGCCGCCGCTGAACGGGCC
GGCGGCGAGGATGTTGGCGCCGACGATGAAGCCGATCGCGATGGGCGCGATGGTGCCGAGCGATCCCTTCTTCGGGTCCGCCGCCGTGGCGTACACCGTG
TACACCAGCGCGAACGTGATGACGATCTCCATCACGACGCCCTCCAGCTCGCTGATGCCGGCGACGCCGTGCG