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Detailed information on CNT30552635


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000778, E-value = 1e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Oryza glaberrimaSetaria viridis31.4150.8689.26326forward
CNT30532843Oryza glaberrimaEucalyptus grandis21.3930.3390.09222forward
CNT30316236Oryza glaberrimaCorylus avellana23.853.8187.04247forward
CNT30547574Oryza glaberrimaIpomoea triloba23.3168.1786.36242forward
CNT30512729Oryza glaberrimaJuglans regia44.5144.984.85462forward
CNT30373394Oryza glaberrimaArabidopsis thaliana24.1844.6684.86251forward
CNT30276060Oryza glaberrimaChenopodium quinoa23.3138.1786.36242forward
CNT30379936Oryza glaberrimaManihot esculenta24.2875.4585.71252forward
CNT30405823Oryza glaberrimaBeta vulgaris22.8352.6785.65237forward
CNT30488117Oryza glaberrimaOlea europaea23.650.286.12245forward
CNT30711584Oryza glaberrimaGlycine max57.4284.6682.38596forward
CNT3045373Oryza glaberrimaPrunus dulcis21.1928.0685220forward
CNT30191304Oryza glaberrimaSecale cereale48.7538.8991.3506forward
CNT30300473Oryza glaberrimaTriticum aestivum36.3238.9589.39377forward
CNT30224354Oryza glaberrimaHordeum vulgare38.5477.0789.5400forward
CNT30395070Oryza glaberrimaTriticum turgidum48.7566.1489.92506forward
CNT30561656Oryza glaberrimaActinidia chinensis47.0134.8684.63488forward
CNT3085191Oryza glaberrimaVigna radiata21.5831.2481.7224forward
CNT30510505Oryza glaberrimaSolanum lycopersicum28.4227.1689.83295forward
CNT30143941Oryza glaberrimaMedicago truncatula23.3154.0283.47242forward
CNT30440797Oryza glaberrimaAegilops tauschii60.486.1387.72627forward
CNT30313757Oryza glaberrimaCamelina sativa25.1429.7684.29261forward
CNT3059659Oryza glaberrimaArabidopsis lyrata21.150.4682.19219forward
CNT30612508Oryza glaberrimaArabis alpina25.0510.2486.15260forward
CNT30135610Oryza glaberrimaLolium perenne37.9646.5789.09394forward
CNT3014085Oryza glaberrimaZea mays53.7691.4888.17558forward
CNT30605685Oryza glaberrimaGossypium raimondii32.8544.6387.39341forward
CNT30683923Oryza glaberrimaTriticum urartu48.7555.389.13506forward
CNT30722731Oryza glaberrimaTriticum spelta21.6844.0384.89225forward
CNT30345702Oryza glaberrimaEragrostis tef19.9425.6288.41207forward
CNT30361520Oryza glaberrimaSorghum bicolor24.4737.1388.19254forward
CNT30596064Oryza glaberrimaOryza meridionalis49.3310099.22512forward
CNT30359537Oryza glaberrimaLactuca sativa22.4535.3681.55233forward
CNT30369654Oryza glaberrimaOryza glumipatula44.4152.3999.57461forward
CNT30154011Oryza glaberrimaPrunus persica10.538.7983.49109forward
CNT30107537Oryza glaberrimaOryza longistaminata84.5995.5499.2878forward
CNT30332479Oryza glaberrimaDioscorea rotundata9.7335.6986.14101forward
CNT30149525Oryza glaberrimaBrachypodium distachyon10.9837.7586.84114forward
CNT30100253Oryza glaberrimaOryza rufipogon97.8892.299.71016forward
CNT30575129Oryza glaberrimaOryza barthii78.4210099.88814forward
CNT30497701Oryza glaberrimaDigitaria exilis30.8398.4691.56320forward
CNT30116094Oryza glaberrimaOryza nivara84.7810099.89880forward
CNT30604019Oryza glaberrimaOryza punctata31.797.3490.88329forward
CNT3050899Oryza glaberrimaCucumis sativus12.7252.3882.58132forward

Expression of CNT30552635

Peptides detected in this lncRNA

>peptide 1 (46 aa)
QRQAKGNNKYHSTETQQECEHYNLDSKKMIQVPHPLHHDRVKIVSQ*

>peptide 2 (57 aa)
MKYDNESSSLSSRPTRTCKGNGTTHAAAKNLELVLEIGEGSHLLLETLPLADILHQG*

>peptide 3 (83 aa)
MLGPVVSGPKHQIFFARSLSQPNSSDRILERTLGSSRGPIRPSSMASANPSSKGRASMYRRLCLFGDLLITVRHDFSRTVSRKE

>peptide 4 (32 aa)
MSQWSNTHWGKAWPDVAALSWLENPKDSMTGR*

Sequence

>CNT30552635
ACAACGGCAAGCCAAAGGAAACAATAAATACCACTCAACAGAGACGCAACAAGAATGTGAGCACTATAACTTAGACAGCAAAAAGATGATCCAGGTTCCA
CATCCGTTACATCACGACAGAGTAAAAATAGTTTCTCAGTAGCACGCGAACATAGGATTGTTGATGTGAAACACATGCATTCGACAAAAGGGAAATGAAA
TACGACAACGAAAGCAGTTCTCTTAGCAGTAGACCAACTAGAACATGTAAGGGTAACGGCACAACACATGCGGCGGCCAAAAATTTAGAGCTTGTCCTCG
AAATCGGAGAGGGGAGTCATCTGCTCCTTGAGACCCTTCCTCTTGCGGATATCCTGCACCAGGGTTGAAGCCTGCGAGCCAGCTTCAAGAGGATCAGAGG
TCATCATGTCCCAATGGTCGAACACACACTGGGGGAAGGCCTGGCCAGATGTCGCAGCCCTAAGCTGGCTTGAGAACCCAAAGGACTCGATGACAGGGAG
GTAAGCCTTGATGTTGTACAGAGGGGTACCAGGTAGACGGGCTCAAGAAGCCTGGGCTTTGCTGTGAGCTGAGAAGCATAGATGACCCTCCTGGCCGTGG
GAATGACCTGGCCACCACCTCTGTGAATAGCATCAGCATGGAGAACAACATCGCACACCTCAAAGCAGATACCACGCATGTTCTCCTCAGCCAGAGCACC
CTCCTTTGATGCCCACTGGAAACCAGCCACAACGGAATCCTTGATTTCATTCAGATACTGAACTCCCTTACACATATCAACCACCATGTTGGGGCCAGTT
GTCTCAGGTCCAAAACACCAAATCTTCTTTGCAAGATCCTTGTCCCAGCCGAACTCCTCAGACAGGATCTTGGAGCGCACCTTGGGATCATCACGTGGGC
CAATACGACCGTCATCAATGGCCTCAGCCAATCCCTCCTCCAAGGGGCGAGCTTCCATGTACAGACGGTTGTGCTTGTTCGGGGACTTGCTCATAACAGT
ACGGCACGACTTCTCAAGGACAGTCTCACGGAAAGAAA