Detailed information on CNT30552628


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30256205Oryza glaberrimaAvena sativa24.029.386.21116forward

Expression of CNT30552628

Peptides detected in this lncRNA

>peptide 1 (55 aa)
SFPEADLQRTPGLSVFGLEQFGMGDRSGNSSRVCTSEDKVCRKDMCWSVRAVYDL*

>peptide 2 (78 aa)
MKAIRCKWARPGRGGSLQNGIRADSRFHGRVHGAHGWCRPGVVTQHGTCAGTGHMDVAKRGRSWPGVDRRGRRSLLRG*

>peptide 3 (38 aa)
MVSEPTHGFTGACMVRMAGVDREWLHSMAHALALDTWT*

Sequence

>CNT30552628
CTTCTTTTCCGGAAGCCGATCTCCAAAGAACTCCAGGGTTAAGCGTGTTTGGCCTAGAGCAATTTGGGATGGGTGACCGATCGGGAAATTCTTCCCGGGT
GTGCACGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGTTGGTCTGTGAGGGCAGTCTATGACCTATGAAAGCTATCAGATGTAAGTGGGCCCGGCCTG
GGAGAGGCGGGTCGTTACAAAATGGTATCAGAGCCGACTCACGGTTTCACGGGCGCGTGCATGGTGCGCATGGCTGGTGTAGACCGGGAGTGGTTACACA
GCATGGCACATGCGCTGGCACTGGACACATGGACGTAGCCAAGAGAGGACGTTCCTGGCCTGGGGTTGATCGACGGGGGCGTCGATCTCTCTTAAGGGGG
TGAGGGTGTAACATCCCGGCCTAGGGCTTAATAGGATTAATAGAATACTCATATCAACAAGTTGCAACTTCTTTTCCGGAAGC