Detailed information on CNT30552618


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F8Q9|MSL1_ORYSJ, E-value = 1e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3066951Oryza glaberrimaLeersia perrieri76.349.181.4371forward
CNT30722486Oryza glaberrimaTriticum spelta73.2573.5584.55356forward
CNT30704500Oryza glaberrimaPrunus avium22.022.7283.18107forward
CNT30109886Oryza glaberrimaOryza longistaminata34.1670.0480.12166forward
CNT30603683Oryza glaberrimaOryza punctata76.7585.7595.71373forward

Expression of CNT30552618

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MDRSSSCEQLKQDNSKAVNIAFQSSNPSLSIFRWDVAQSTN*

>peptide 2 (54 aa)
EPATGGGGMVPLPSSGTEIAGQPRFGVYTVQAGDNFLYSRPHAGITVDTLASSF*

>peptide 3 (76 aa)
RSRRPAAAAWSLSRAAVRRSPDNLGLASILSKQETTSFIVGLMQGLQLTHLQAVSSTFSICSSYPVPRSIGSRTSI*

Sequence

>CNT30552618
CGGAGCCGGCGACCGGCGGCGGCGGCATGGTCCCTCTCCCGAGCAGCGGTACGGAGATCGCCGGACAACCTAGGTTTGGCGTCTATACTGTCCAAGCAGG
AGACAACTTCCTTTATAGTCGGCCTCATGCAGGGATTACAGTTGACACACTTGCAAGCAGTTTCTAGCACCTTCAGCATTTGCTCGTCATATCCTGTCCC
TCGCAGTATTGGATCCAGGACCTCAATCTGATTCCCTTCTGATTTCATCTCCTGTACCCACTTGACAAGTTCTTTGGATGAAGACAAGATATGGACAGGT
CGTCTTCCTGTGAGCAGCTCAAGCAGGACAACTCCAAAGCTGTAAATATCGCCTTTCAAAGTAGCAACCCATCCTTGTCCATATTCAGGTGGGATGTAGC
CCAGAGTACCAACTAGCTCCGTAGTGACATGTGTTTTGTTGGCAAGGATTAATCTTGCTAGCCCGAAATCAGCAACATAAGCTTTA