Detailed information on CNT30552615


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691571Oryza glaberrimaOryza sativa98.7396.4198.672414forward
CNT30716144Oryza glaberrimaMalus domestica golden2.6621.3886.1565forward
CNT30595788Oryza glaberrimaOryza meridionalis24.6249.7193.36602forward
CNT30369709Oryza glaberrimaOryza glumipatula95.0593.1199.532324forward
CNT30100164Oryza glaberrimaOryza rufipogon27.6110098.96675forward
CNT30575462Oryza glaberrimaOryza barthii100.0483.8899.962446forward
CNT30115919Oryza glaberrimaOryza nivara9.5310099.14233reverse complement

Expression of CNT30552615

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLVFAYVEITNCSVTFVLCITVDALTEGDRLVLLPAPEHA*

>peptide 2 (62 aa)
MDVRYSDRFSMCWVLFSEFVVVIRCSEITALYLGPMQSAKSLSCQKDVHGFSIICKLEVGLP*

>peptide 3 (36 aa)
MLSDSHSSNISRCGICVAQVHQSVIVVQSSVLIILD*

>peptide 4 (39 aa)
MWDMRSTSASECYSCSVFSAYYSRLIWTNLSIQLTLVFV*

>peptide 5 (63 aa)
MLFSSNLCSIILHYHQMLLLPIQYSASSCIVHCFILFKVCLFLLMLRLRIARLLSSYALLLMH*

>peptide 6 (35 aa)
MITCGFLASCAVAASSLLPPSAKSISKKRKSCQFP*

>peptide 7 (36 aa)
MNIIPSAAVKFLCVDGLFLKIYIFYVYNCLSSLLVN*

>peptide 8 (30 aa)
MSVSLNYIHMINLETQYVAKNHTQLNHICI*

>peptide 9 (30 aa)
MSDGIFEPKIEGKRRISVGACYVLQFFETM*

>peptide 10 (33 aa)
MMSTVSNVNSRQIRFIPFWCLVSFCIFHERWHF*

>peptide 11 (33 aa)
MQRNYCAVSWTNAISEVLIVPKGCAWIFHHLQT*

>peptide 12 (30 aa)
MAGTRGGFELLHMVAPSMRQQPHYLQERHK*

>peptide 13 (31 aa)
MYPCCSGFVALQPFCLRYWHLLFRKPFSNSF*

Sequence

>CNT30552615
CGACACCTGTTCCATTTAAAATCCGCCCGGGCCGACGTGGCCGCCTGCGCGGCCACAACCCTCTCCCCGCGACGTAATTAAACTAATCCCCGCTTAACCC
AAATCTTCCCCTCCTAATCCCTTTCGCCGCGCTCCGTTCCCTCCCTCCTCTCGTCCCCTTCGCCAAAAAAGCCGAACTCCACTACGCCAATTTTCCTGCC
TTTTCTACCCCCCACTTGGAATTCTGGAAACATCGATTCGATCCTTCTAGACCCTTCTCCGCCCCCGTTTTAAAGTGCGCCGGCCTCCCACCCGTCGCTT
CATCGCTCGCGGTCGCAGTCGCAGTCGCAGTCGCCCACACCCTTGCCGCACCATGGCTGGAACCCGCGGCGGATTCGAGTTATTGCACATGGTGGCACCA
AGCATGAGGCAACAACCGCATTACTTGCAAGAAAGGCACAAGTAAGACCTCTCACAAAATCATTAGATGATTACTTGTGGCTTTCTTGCAAGTTGTGCAG
TTGCTGCCTCAAGCTTGCTGCCTCCCTCTGCCAAATCTATCAGCAAAAAAAGAAAATCATGTCAGTTTCCTTGAACTATATACATATGATTAATCTAGAA
ACGCAGTATGTTGCCAAAAATCACACACAACTCAATCACATATGCATTTGAGATGAGGTAAAATGCTATCTGATTCACATAGTTCCAATATCTCAAGATG
TGGGATATGCGTAGCACAAGTGCATCAGAGTGTTATAGTTGTTCAGTCTTCAGTGCTTATTATTCTAGATTAATTTGGACCAACTTGTCAATTCAGCTGA
CACTTGTTTTTGTCTAGTGCTCCAGTAGCTTGGTTGTTTCATCATCATTAGACTTTTAAACCTTTGGTCCTAAACTCCTAGCTGAAAATTTTGCACACTG
AACTTCCCTGTGTTCTAAGGAAAAAAAAATCTAGACATAACCTTGCTGATCTGTATTATGGACTGGCCATTGGAGTGCATAATGCATAACTGCTGATCAC
TTTGTTGGCACAAAACTTACGCATAGACATAGGAGGTACTTATGTATAATTGTGTCTTTAATCAGGACTTTGTTTTCAACCATTTTGTTGATATAACAGT
TATACTGTAGTAATGATGAGTACAGTCTCCAATGTAAACTCAAGGCAAATCAGATTTATCCCTTTTTGGTGCTTGGTATCTTTTTGTATTTTTCATGAGC
GATGGCATTTTTGAACCCAAAATAGAGGGAAAGAGAAGGATCTCTGTGGGGGCATGCTATGTACTACAGTTCTTTGAGACCATGTAGGTGTGGATGCTTG
TTTTGACCTTTTCCTTAACATATAGAAAGAATAAACATTAAATAAATGATGACATGGAAATGAAATTCATAAAGGAGTACATAAGCTAGTACTCCTGAAA
ATATCACTTCATATTCCCCCATGATTCAGTAACATGAATATCATACCATCAGCAGCAGTGAAATTTTTATGCGTAGACGGTTTGTTTCTTAAGATATATA
TTTTTTATGTTTACAATTGTCTGTCGAGTTTACTGGTCAATTGAGCAACAACGGTACTTTTAACTGTTAATATCACTTGGTTTGCTATGTATCCTTGTTG
TTCTGGCTTTGTTGCTTTACAGCCATTCTGCTTACGCTATTGGCATCTGTTATTTAGAAAACCATTTTCTAACAGTTTTTAGATTTCCTTTCGAGTCTCC
AACTGTTTTTAACCTCCAAGTTGCCACATAATGCATAAATATACCGAGTAAGTTTGCCCCCCTCTGAAATATGGATGTTAGATACTCAGACAGGTTCAGT
ATGTGTTGGGTGTTGTTTTCTGAGTTTGTGGTTGTCATAAGATGCAGCGAAATTACTGCGCTGTATCTTGGACCAATGCAATCAGCGAAGTCCTTATCGT
GCCAAAAGGATGTGCATGGATTTTCCATCATTTGCAAACTTGAGGTTGGCCTGCCCTGATGCCCTCAGATGCTGATGAAGTGTGTGGTTCATGAAAACGT
GAGAAGCTAAGTAGTGGAGTAACGGGAGTGAGTACCAGTGTGGCCACTATGAAGAAAGTTAATTACTGAGAAATTAAGACTTGAGCATGTTATTTTCAAG
CAACTTGTGCAGCATTATATTGCACTACCATCAAATGCTTCTCCTGCCTATACAATACTCTGCAAGCTCTTGTATTGTACACTGTTTTATCTTGTTTAAA
GTATGCTTGTTTTTGCTTATGTTGAGATTACGAATTGCTCGGTTACTTTCGTCCTATGCATTACTGTTGATGCATTAACCGAGGGAGATCGACTAGTGCT
TCTTCCTGCTCCAGAACACGCTTGATAATTGAGGAGTTTGCAGGGGCTTAGTTAGATTATGGTTGGGCCCAGTGTCCTAATCTAGGAACCTGCAGCAATC
TGCCCCCTTTGGCCCATGCGTGGCTTGCAGCTCTTGCCAACCTCA