Detailed information on CNT30552577


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690984Oryza glaberrimaOryza sativa91.68100.1297.831709forward
CNT30189868Oryza glaberrimaSecale cereale8.7455.0784.66163forward
CNT30441953Oryza glaberrimaAegilops tauschii3.8122.6888.7371forward
CNT30722320Oryza glaberrimaTriticum spelta9.9847.5784.41186forward
CNT30109881Oryza glaberrimaOryza longistaminata56.9777.4198.681062forward
CNT30575370Oryza glaberrimaOryza barthii79.8310099.661488forward

Expression of CNT30552577

Peptides detected in this lncRNA

>peptide 1 (61 aa)
QNEVGIFPVKLLVLALSATRLFITSHVVDEKIPVNKLLDMFSTCRGRSGVEDGRSLRPPVM*

>peptide 2 (62 aa)
MSGNDQTRKNACMEDNISAFGPSLSQIGLDTQSHHYVLSSLFSLRKCANMAVCIRFECRSEF*

>peptide 3 (67 aa)
MAKVNHVKSVFVVLVGKMEGLHSFLHRLSIGANSLMKKEQDRKGTNSCYLFLCLIIQVIVTKFMSQD*

>peptide 4 (56 aa)
MLIEYAVSMAMIMSVKYKCRRAQVAIIKNQSCKELKISFRKMKAAARIDRTLFIFI*

>peptide 5 (33 aa)
MTNNIIQKKKRSTCFEAVIDVKIHMCTGMERTD*

>peptide 6 (31 aa)
MVLAFGLRLLKSRLAAMLDQTAASLEGLRID*

>peptide 7 (31 aa)
MLMNLDIYIYMNVENTRKYYIMKRRERKFCL*

>peptide 8 (47 aa)
MPFFHDMPRPPSLESPVRNWTSEFLSCSVQELVGEAKKSSSTRAWPR*

>peptide 9 (46 aa)
MLLDDTSSSGKPPDSELWDKLRRIRPVRLPREGDPFPCAAVHAILP*

>peptide 10 (46 aa)
MSRSTCVRAWKERINGGNISQGSLVDPEAFTFLAVVSIKALVLVNI*

>peptide 11 (42 aa)
MVKENVKNYKHIPACQVMTKQEKMLVWKIIYQLLVRHFHRSV*

>peptide 12 (50 aa)
MEEIFPRALSLTLRRLLFLPLSASKLWFWLTSKLQMAIGLRWFWPLDCDS*

Sequence

>CNT30552577
ACAGAACGAAGTTGGTATATTCCCAGTAAAGCTGTTGGTGCTGGCATTGAGCGCGACAAGACTCTTCATCACCTCCCATGTGGTTGATGAAAAAATTCCT
GTAAACAAGTTGCTCGATATGTTCAGTACCTGCAGAGGCCGGTCAGGGGTTGAAGATGGCAGGTCACTTAGGCCTCCTGTCATGTAGTTAAAACTGACAT
CAAGGACCACGATGCTGCTGGATGACACCAGTTCCAGCGGTAAGCCACCGGACAGCGAGTTGTGGGACAAGTTGAGGCGCATTAGACCTGTGAGATTGCC
AAGGGAAGGTGATCCCTTCCCATGCGCAGCAGTCCATGCCATTCTTCCATGACATGCCCAGGCCACCATCCCTCGAGAGCCCGGTGAGAAACTGGACAAG
TGAGTTCCTCTCTTGCTCGGTGCAAGAACTGGTGGGAGAGGCCAAGAAGAGCAGCAGCACAAGAGCATGGCCAAGGTAAATCATGTGAAATCTGTTTTTG
TGGTTCTTGTTGGAAAAATGGAGGGGCTGCATAGTTTTCTCCATAGGCTAAGCATCGGAGCCAATAGTCTGATGAAGAAGGAACAGGATAGGAAGGGAAC
AAACAGCTGCTATCTCTTTCTTTGTTTGATCATTCAGGTCATAGTCACCAAATTTATGAGTCAGGATTAAGATCTTATTGACTAATTGCAGCATCGCTTT
CTAAGTTAACTATTCCCCACCCGCCACTACAGTTTATTGGAAAAACACATCTTTTTTTTTTGGCGAAAAGAAGGGACCTCACAGATTTGCAAGATCGGAT
TGGTGAGGTACATGACAAACAACATCATTCAGAAAAAGAAAAGGAGCACATGTTTTGAAGCAGTCATCGATGTCAAGATCCACATGTGTACGGGCATGGA
AAGAACGGATTAATGGAGGAAATATTTCCCAGGGCTCTCTCGTTGACCCTGAGGCGTTTACTTTTCTTGCCGTTGTCAGCATCAAAGCTTTGGTTTTGGT
TAACATCTAAGTTGCAAATGGCAATTGGTTTACGATGGTTTTGGCCTTTGGACTGCGACTCTTGAAGTCTAGATTAGCAGCAATGCTGGACCAGACAGCA
GCATCATTAGAGGGGCTGAGAATCGATTAGTCAGGTTAATGGCAGTGTTCATGTGATCATTAGCTGGTATTTCAGTAACCAGCAAAAAGATTGCTTGCAT
TTGTCTTTTCCTTTGGCAGATAAGGAGTACTTCTGATGTTGATAGAATATGCTGTTTCTATGGCTATGATAATGTCTGTCAAATACAAATGCAGAAGGGC
ACAAGTGGCTATCATTAAAAATCAAAGTTGCAAGGAGTTAAAAATAAGTTTCAGGAAAATGAAGGCGGCAGCAAGAATTGACCGTACTCTTTTCATTTTT
ATCTAGTACTTCATCCGTTTTATAATGTAAAGCTTTCTAACATTAACCACATTCGTATAGATGTTAATGAATCTAGACATATACATTTATATGAATGTGG
AGAATACTAGAAAGTATTACATTATGAAACGGAGGGAGCGTAAATTTTGTCTGTAACTATCAGTATGTTCTTTTGCCGAGTCGGCCGAACGAGGCAGACC
AAATTTCATTATGGTAAAGGAGAATGTAAAGAACTATAAGCATATTCCAGCATGTCAGGTAATGACCAAACAAGAAAAAATGCTTGTATGGAAGATAATA
TATCAGCTTTTGGTCCGTCACTTTCACAGATCGGTTTAGATACACAGTCCCATCACTATGTGTTAAGTTCTCTTTTTTCTCTAAGAAAATGTGCCAATAT
GGCTGTGTGCATCCGTTTTGAATGTAGATCCGAGTTTTAATTCATTTTTTTAAAAATAAATGTC