CANTATAdb - search

Detailed information on CNT30552575

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691491	Oryza glaberrima	Oryza sativa	100.2	57.44	99.29	980	forward
CNT30369514	Oryza glaberrima	Oryza glumipatula	99.49	82.46	99.59	973	forward
CNT30107388	Oryza glaberrima	Oryza longistaminata	100.2	96.36	98.06	980	forward
CNT30100370	Oryza glaberrima	Oryza rufipogon	99.9	92.34	98.57	977	forward
CNT30575180	Oryza glaberrima	Oryza barthii	97.75	100	99.9	956	forward
CNT30603597	Oryza glaberrima	Oryza punctata	52.56	39.36	90.27	514	forward

Expression of CNT30552575

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MNSSTYEHLARLRRLYIVYWLPLLNVSLITHDMLAWKGSFELIMRPVTILSSEL*

>peptide 2 (45 aa)
MPFSASSRRPLPSTVPVRRARGFSDSCKGTVTSLWQQLHILQENL*

>peptide 3 (29 aa)
MRLNNICLLLEGKRCMTVLKQMKNSSFYEV

Sequence

>CNT30552575
CGCGCGACGGCGCGGCGCAGCCGCACCGATCTCGTGAATTCCCCTCCCTGACCACTCTCCCGGCCCCGGCCCCGGCCACCACCTAAATCGCAATGCCTTT
CTCCGCTAGCTCCCGCCGTCCCCTCCCCTCGACGGTGCCGGTGCGGCGCGCGCGTGGTTTCTCAGATTCATGCAAGGGGACGGTGACAAGCTTGTGGCAG
CAACTGCACATCTTGCAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCT
TTGCCAAAACTATCAAGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGACAAAATTAAAGTAATAAACATGTCTGACCAACAAACACAAT
GATTAATAACAAAACTCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGTTATAATATGAAAACTAGATGGAGGCAGTGCCACCAGGCAAT
TGCAAATGAACTCATCAACATATGAACATCTAGCAAGATTACGTCGTCTCTACATTGTGTATTGGCTTCCACTGCTGAATGTTTCTCTTATTACCCATGA
CATGCTTGCTTGGAAGGGCAGTTTTGAGTTGATCATGAGGCCAGTCACAATTCTTAGTAGTGAATTATGAATTTCTAAATGCATTATGTTAGTTTCATGG
CTTGATCCTTGGTTTCTTTGTTTTGTAGGTTTGCAGGAATTTCTCTAGGAATGCCCAGTGAGTGATCCTGTAAATTTTGGAGTTGATTGTTCATCAGAAT
AGCACTATAATTTTCCTGTCACCTGTGCTTTGGCAGCGGAACGTTCATTGTCCCATGCTACTCAGCTTTGTACTTTTGTAAATCAAATGAGACTGAATAA
TATATGTTTACTTTTGGAAGGAAAAAGATGTATGACTGTTCTCAAGCAAATGAAAAATTCCAGCTTTTATGAAGTTAA