CANTATAdb - search

Detailed information on CNT30552482

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691342	Oryza glaberrima	Oryza sativa	98.01	82.86	99.29	986	forward
CNT30369626	Oryza glaberrima	Oryza glumipatula	99.5	82.05	99.6	1001	forward
CNT30100577	Oryza glaberrima	Oryza rufipogon	66.4	58.85	99.55	668	forward
CNT30575255	Oryza glaberrima	Oryza barthii	93.64	100	99.89	942	forward

Expression of CNT30552482

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRLNNICLLLEGKRCMTVLKQMKNSSFYEV

>peptide 2 (45 aa)
MPFSASSRRPLPSTVPVRRARGFSDSCKGTVTSLWQQLHILQENL*

Sequence

>CNT30552482
CGGCGCAGCCGCACCGATCTCGTGAATTCCCCTCCCTGACCACTCTCCCGGCCCCGGCCCCGGCCACCACCTAAATCGCAATGCCTTTCTCCGCTAGCTC
CCGCCGTCCCCTCCCCTCGACGGTGCCGGTGCGGCGCGCGCGTGGTTTCTCAGATTCATGCAAGGGGACGGTGACAAGCTTGTGGCAGCAACTGCACATC
TTGCAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTA
TCAAGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGACAAAATTAAAGTAATAAACATGTCTGACCAACAAACACAATGATTAATAACAA
AACTCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGTTATAATATGAAAACTAGATGGAGGCAGTGCCACCAGGCAATTGCAAATGAACT
CATCAACATATGAACATCTAGCAAGGTGAGTAAAGTCTGGTAAGGTGCTAGATGAGTAAAGTCTGATTACGTCGTCTCTACATTGTGTATTGGCTTCCAC
TGCTGAATGTTTCTCTTATTACCCATGACATGCTTGCTTGGAAGGGCAGTTTTGAGTTGATCATGAGGCCAGTCACAATTCTTAGTAGTGAATTATGAAT
TTCTAAATGCATTATGTTAGTTTCATGGCTTGATCCTTGGTTTCTTTGTTTTGTAGGTTTGCAGGAATTTCTCTAGGAATGCCCAGTGAGTGATCCTGTA
AATTTTGGAGTTGATTGTTCATCAGAATAGCACTATAATTTTCCTGTCACCTGTGCTTTGGCAGCGGAACGTTCATTGTCCCATGCTACTCAGCTTTGTA
CTTTTGTAAATCAAATGAGACTGAATAATATATGTTTACTTTTGGAAGGAAAAAGATGTATGACTGTTCTCAAGCAAATGAAAAATTCCAGCTTTTATGA
AGTTAA