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Detailed information on CNT30552475


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002862, E-value = 2e-136

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696416Oryza glaberrimaOryza sativa38.6345.9991.83367forward
CNT3068336Oryza glaberrimaLeersia perrieri32.2156.3586.93306forward
CNT30575068Oryza glaberrimaOryza barthii63.6898.3799.5605forward

Expression of CNT30552475

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MVLVPRQNSNQATENLQNKPRTLSSLNLIIHALVMFGLCSFA*

>peptide 2 (42 aa)
RRITTLFYFRCFDEFLLLSWASSGSISDEERYLLGRKKRDRA*

>peptide 3 (57 aa)
MTKIPMDKTSKIWINNLKYYILSFLLYFGCLQSYVYNMIHWKFCPNFGSFFRGILVI*

>peptide 4 (44 aa)
MIKEVDWGPNQDLFQVFFYLTTSLLVHIRQEMKFYTFWIRIRAS*

Sequence

>CNT30552475
CGGCGCATCACCACCCTTTTCTATTTTCGTTGTTTCGACGAGTTTTTGCTTTTGAGTTGGGCTTCATCGGGTTCGATCTCTGACGAAGAGAGGTACTTGC
TTGGGCGAAAGAAAAGAGACCGAGCGTAAGCAATGCATGGATGATTAAAGAAGTTGATTGGGGACCAAATCAAGACCTTTTCCAAGTCTTCTTTTATCTC
ACCACGTCACTTTTGGTCCATATAAGACAAGAGATGAAGTTCTACACGTTTTGGATTCGGATTCGGGCCTCCTGACAGCATCAACTTCAAACGGACCTAG
CTGCTGATCTAGAAGGAAATTCGGGTCCCATGAGTACTTGTTGGAAAGCTTATAGAGTCTACTTTTAGATGGTTTTGGTCCCACGTCAAAATTCCAACCA
AGCTACCGAAAATCTGCAAAACAAGCCACGTACCTTATCCAGTTTGAATCTGATCATCCATGCATTAGTTATGTTCGGTCTCTGTTCCTTCGCCTAAACA
AGTACCTCTGCAAACGAAAGCACACAAAACTCATTGTGTAGCAACGTTTGTTCAAATATATAAGAAGTAAATCTAATATATAACATATGCACCTTTGGTT
GATTAATACATAAGGTAGTTATGGTTATATCCGAGCTAGTTGTATCCTCATCAACTTTTGCTTAACTTCTACAATATACCATCGCCGTCCGGTTAACCTC
CGTTAGTGCCGTACAATTTTATCCAAATGACCAAAATTCCCATGGATAAAACTTCTAAAATTTGGATAAATAATCTAAAATATTATATTTTAAGTTTTCT
GCTATATTTTGGATGCTTACAATCTTATGTTTATAATATGATACATTGGAAGTTTTGTCCGAATTTTGGAAGCTTTTTTAGGGGTATTTTGGTCATTTAA
ATAAAATTGTACAGTACTAATGGGGACCTGATGGCGATGGTAAATTACAG