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Detailed information on CNT30552455


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000279, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690513Oryza glaberrimaOryza sativa94.2237.3499.281108forward
CNT3099989Oryza glaberrimaOryza rufipogon94.2271.4899.281108forward
CNT30574860Oryza glaberrimaOryza barthii88.8610099.91045forward

Expression of CNT30552455

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MWFSSSFRNPSLLFYCCSSGSKVILLLGSCSTGNT*

>peptide 2 (47 aa)
TYTTFFLFSLFLVLPFSPSRSLQRRRFLGSAGDLPCAGCHAPLRRPL*

>peptide 3 (64 aa)
HLHHLLPLLSFSRSPLLSLTFSPAPPLPRQRRRPPLRRLPRPTPATPLAVAGLNQLLGSSLLCP*

>peptide 4 (35 aa)
MISISTMHMHNICDAYCIKFLENMYVCRPVVVNCK*

Sequence

>CNT30552455
CACCTACACCACCTTCTTCCTCTTCTCTCTTTTTCTCGTTCTCCCCTTCTCTCCCTCACGTTCTCTCCAGCGCCGCCGCTTCCTAGGCAGCGCCGGCGAC
CTCCCCTGCGCCGGCTGCCACGCCCCACTCCGGCGACCCCTCTAGCCGTCGCCGGGCTGAATCAGCTTCTTGGCTCCTCACTTCTCTGCCCCTAAGCTAA
CCCTAGCCTCTGACCTCTTCAACCTAAGATGCAACCGGCGGCCAATTCTGGCGAGATAAGGATTTAGGGAAGTTTCCCAGACCCCTACCGCTGGATCTAC
TCTCCTCCCCTATTTTAATTTTTGGTTACCTCTGATGATCCTACCGTGATTGAAAAATATGTGGTTCAGCTCCTCCTTCAGAAATCCAAGTCTTCTCTTC
TACTGCTGCTCTTCTGGATCTAAGGTAATTCTCCTCCTTGGCTCTTGCTCTACTGGTAATACTTGACTGCTTCCTGACAGGATCTGCTACTGATTTGGTT
CACCACTCTCTGATTGCTTGGCCATGGTTACTACTACTTGTTGATTCATGTATTGGTTTGAGCTGGACTTCAGTTGAGCTATTTCTGTCCGGGTGGAGCT
AACATTCTAGCTGATTTTGCTAAGCTTGGTTCTATGATTCTAACTACTACTGCCGCAGCTGCTGCTATTGCTCTACTGCGGTAGGTGCTTGAGGTGGTTT
TCCAGCCGATGCAACCGAGGCTGGGGTTCACTGAATAGCTTGGTTGATATATATGTGAATTTGGTGAAGACTAGGTGACTCACCTACTTTAGTTTTGGTG
GTTGTTTCACTGACTGACACCTAAGCAGTGCTTGATCGGTGGAGTAACGTGGGATTTCACTAAATTTTTCTAGTTACATAAATTCTGATACAATTAGGTA
CTTTTGCACTTGAGTCCCTCAGGGTCTCTAAAATTGAAGGTTACTCTGAGATTAGGGACTGATTTGTAATTGTTCTAGAACTCAAGAGTTTTTCTGAAAA
CTAAATAATTATTGAATCTTTGACTGAGATGGTTCAGTTTATGATATGATATCCATAAGCACCATGCATATGCACAATATATGTGATGCATACTGTATAA
AATTTCTAGAGAACATGTATGTATGCAGACCTGTAGTGGTAAATTGTAAATAAAGAACTGTGATTTCTACTGTGCA