Detailed information on CNT30552454


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004001, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30575011Oryza glaberrimaOryza barthii78.4680.6199.592444forward

Expression of CNT30552454

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMRSHDFVVWLRIIVKDRFLWEIHPNTLQCDHTGIYGMPLAK*

>peptide 2 (40 aa)
MKMKTSTRPPRSISKSKPSMKTFKCFVPSPKPRLWNKLVA*

>peptide 3 (75 aa)
ASELRLSLSLASCRHRRMTPLPSPRAVTLAIALPPHIRGRASSRHRLTASCRLSPSGKSPSRVSPSLSRSIATTV*

>peptide 4 (61 aa)
MFFCAVVLLIYGPVYDGNVCKDYYPSDVIKQFTLIPHLFCMYKIVYPGTGTISQVMHNTLI*

>peptide 5 (58 aa)
MFRRRSRSPRVVSRRVAPSPSPSRRCSRIAAFCRRDLADAVPPQRRRVDIPSVPGIPP*

>peptide 6 (57 aa)
MRFSWVSFGKALSRISGTGQYRCKFRVVWVKRTTSAEINELFEQPYPRSRAGVRCFS*

>peptide 7 (92 aa)
MTLWFGYVLSLRTDSFGKSIRTRYSATTRVFMGCLWPSKLLSHRSWCANGCGMTRMRRRSVTHLLPIMDVFLPLLWRGTSRSRRHPRYFLSG*

>peptide 8 (89 aa)
SLRAASLSFSRVLSPPPHDAAPVASRRHLGHRVAASHPRTRVLSPSPHRVLSTVSFREVAEPRLSLSLAFHRHHRVTSLASHRSESPTP*

>peptide 9 (33 aa)
MTPTLCKASLFDHIAPIFTMICCLKNALLSSHD*

Sequence

>CNT30552454
AGCCTCCGAGCTGCGTCTCTCTCTTTCTCTCGCGTCTTGTCGCCACCGCCGCATGACGCCGCTCCCGTCGCCTCGCGCCGTCACCTTGGCCATCGCGTTG
CCGCCTCACATCCGCGGACGCGCGTCCTCTCGCCATCGCCTCACCGCGTCTTGTCGACTGTCTCCTTCCGGGAAGTCGCCGAGCCGCGTCTCTCCCTCTC
TCTCGCGTTCCATCGCCACCACCGTGTGACGTCGCTCGCGTCACATCGATCTGAGAGCCCTACACCTTGATTCCCGGCCGTAGCCGTCGTCGGCCACGCG
TCACCCATGTTCCGCCGCCGTTCCCGCTCTCCGCGCGTCGTCTCGCGTCGCGTCGCGCCGTCGCCGTCGCCATCGCGTCGCTGCAGTCGCATCGCCGCGT
TCTGTCGCCGTGACCTCGCTGACGCCGTGCCACCGCAGCGCCGTCGCGTCGACATCCCCTCCGTCCCAGGAATCCCGCCATAGCAGCTAGCTGGCTACCC
GCGAAATCCCGCGTCTAGACCGCCAGCTCGACGCCGCGTCGCCCGCCTATAAAAGGAGACAAACCCGAGTTCCTTCACCCCCACACCATTACCATCCATT
GCCATCTCTCTCTCCTCTTTCTCCTCTCTTGATTTTGCTCTCTCTGTGCCACCGCATTTGCTCTACCGGGTCGCCGCGCCTTCTTTCCTAGAGCCGCCTC
CGCCGTCGGAGCGTCGCCGGAGGTCCCCGCCGCTCCCCTCGGCCGCCGGACGCCCAGCCGTGCACGCCGCCGCGACACGCCCTCGGGCCGAGCCGAGAAG
AGCGAGAAGAGGAAGGAGAAGCCGAACCGCGCCCTCTCTCCAAGCGCCGCCGTCGCCGGCGGAGCCTCACCGGAGGTCGCCGCCGTCTCCCCTGGCCGCC
GGTTGTCTCGCGGCGCCTCGCCGCCACGGCGCCGTGCCGCCCCGAGCCGAACCAGTGCGGGAGAAGGAAGACGAAGACTTCCCCAGCCGCTGACAGCCCG
GCCCCGCACCTCTCTCTTTCCATCAATCGCTGACAGCCGGGCCCCGCGCGCCTTCTTCCTTCTATCAGCCGCCGACAGCTTTGTTTTCGCGTTAAGAGCC
CGAGTTCGAAGAAGCCCTGGACGCCGCTTTCGAAGGAGATGACCCCAACCCTGTGCAAGGCAAGCCTCTTTGATCACATTGCCCCTATATTTACAATGAT
ATGTTGTTTGAAAAATGCATTGCTTAGTTCACACGATTAACATATTTAGGCCTCGGATTGTTTATACAACCGACGGACCAACCTAGTAGACGCACTTATA
TTACATAGGTTGATGTTTCCATACCTTTGATAGCTCCACAAATATTTGCGCTGGAATCGTTATACGATTACCGAGGTAGTTTCGCTTAGCCATGCTTACG
TTGTTGCTGTGTGGGAAACTTGGGTTATTCCAAATACATGTTTAAAAATCCGGTACGTTGTACGGAGGAGTTGTGAAATAAAATGTGTTGTGAAAGTGGT
GATGATGCGGAGTCATGACTTTGTGGTTTGGCTACGTATTATCGTTAAGGACCGATTCCTTTGGGAAATCCATCCGAACACGTTACAGTGCGACCACACG
GGTATTTATGGGATGCCTCTGGCCAAGTAAATTGTTATCACATAGGAGTTGGTGTGCCAATGGTTGTGGAATGACGAGGATGAGGAGACGAAGTGTTACA
CATTTATTGCCCATCATGGATGTCTTTTTGCCTCTATTGTGGCGTGGTACCAGTAGGAGTAGGAGGCATCCTCGGTATTTCCTGAGTGGATGATGACTGT
TATTGCCTGATACTCGGCTATGGATCTTAGCCCAACAAGGTGACATGCGATTTTCATGGGTTAGCTTTGGAAAGGCCTTATCAAGAATTTCCGGTACCGG
CCAGTACCGGTGTAAGTTTCGTGTCGTGTGGGTAAAGCGTACAACCTCTGCAGAGATTAATGAACTGTTCGAACAGCCGTACCCACGGTCAAGGGCGGGT
GTAAGGTGTTTCTCATAGCGTAGATTTGTTTGACAAATGTCTGTGAAGAAGTGATTATTGGGAAGGGTAACGTTTCCAGAGTCCGCCTGTGTGGCAGACG
GCTAACCTGGGTGGTTAGGAACGGATCTGTGTGACCTGGGGTGTCGTCCGACACCGAGGTGTTGTTAGGGCCATGATGATGGCGTTGTTGTGCTAAGATA
ACTGTGTGGGCTATGTGTTGTTGTGAAAGTGAGAAGAAGCTAATAGAGGAAACAAAATAATTGTTGTTCGTTAATCGTGACAAGTTGTTGCAAAGCAACT
TGTGGAATGGTTCGAGGCGTGAGCCTCCTCCCGACAACTAAAACTTGACTCACTCACTAGGAGTTTTGTAAAATAAATCACTTTGCCAAAAAGGCAGCTT
TCGCAAATAAAACCTTAGCCTCCTTGTTTAAACCTAACATGTCATTCTTTTCCCTGGCTTGCTGAGTACGTTAAGTACTCACCCTTGCCCATATAATAAT
CTATAGAGTATGAAGATGAAGACGTCGACCCGACCGCCGAGGAGTATCTCCAAGAGCAAGCCGAGTATGAAGACTTTTAAATGTTTCGTGCCTAGCCCCA
AGCCTCGCCTGTGGAATAAGTTAGTTGCCTAGGTTCTTTGCCTAGTGCGTAGTTGCTTAGTCGCTTAGTTTCTCCGCGTTATTCGCTTCTGCGCCATCGT
TTTTATGTTTTTCTGTGCTGTTGTGTTGCTCATCTATGGGCCTGTCTATGATGGCAACGTTTGTAAGGACTACTACCCCAGTGACGTAATAAAGCAGTTT
ACTTTGATTCCACATTTATTCTGTATGTACAAGATAGTGTATCCTGGGACTGGTACTATATCACAGGTAATGCATAACACCCTGATATAAGTTAGTTGTG
TTTATGGCTAACAAATATCGGGGCGTTACAGATTGTCCATGCACTTTACTCTAATTTTAAATACCTCTTAAAATATTGTTCAACGACAAGAAGAAAATAC
ATACTTGACCGATCTGATGTAATTTCATATTAGCGGGCTACATCATATTCTTTTTCACATGACAACGTCATACCTTAGATCTCAATCCGGCCCACCATGG
TCAGCTCACCCTTTT