Detailed information on CNT30552385


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369461Oryza glaberrimaOryza glumipatula45.3517.3898.21390forward
CNT3099503Oryza glaberrimaOryza rufipogon45.3534.5496.67390forward
CNT30574585Oryza glaberrimaOryza barthii50.5878.38100435forward

Expression of CNT30552385

Peptides detected in this lncRNA

>peptide 1 (50 aa)
FALRQIASARFPFPFPSPSGGIANRRPRTPMAPSRAARRPLLSALRQTPP*

>peptide 2 (59 aa)
MLRTCHLCMGLVCVGAKLPDRVVPVEFNFQILLPASGLLNIRSVFQIEGKNACPPTRSG*

>peptide 3 (90 aa)
SPSAKSPALGFLSLFLRPPEGSPTAALAPPWPHPAPPAALCSPPFAKRRLDFDPPKPWPPLPAFRSPFGPHRAASPLRRHPDRGQEIEQR*

>peptide 4 (87 aa)
LRPPPNRQRSVSFPFSFALRRDRQPPPSHPHGPIPRRPPPFALRPSPNAALTSIPLNPGRRCPRSGRRSDPIAPPRPCVATRTAARR*

>peptide 5 (40 aa)
MPLPSNPISFKRQVAAAATRFSTGHVKALHEMRGRLNDGG*

Sequence

>CNT30552385
CTTCGCCCTCCGCCAAATCGCCAGCGCTCGGTTTCCTTTCCCTTTTCCTTCGCCCTCCGGAGGGATCGCCAACCGCCGCCCTCGCACCCCCATGGCCCCA
TCCCGCGCCGCCCGCCGCCCTTTGCTCTCCGCCCTTCGCCAAACGCCGCCTTGACTTCGATCCCCCTAAACCCTGGCCGCCGTTGCCCGCGTTCAGGTCG
CCGTTCGGACCCCATCGCGCCGCCTCGCCCTTGCGTCGCCACCCGGACCGCGGCCAGGAGATAGAGCAGCGGTAGACGTGCGGCGTCTTCCTCCTTAATC
CGTCACCTCGGTTTCTTAGTTCCTCCCACCATGCCCCTCCCTTCCAACCCTATCTCCTTTAAGCGCCAAGTCGCCGCAGCAGCAACGAGGTTCTCAACGG
GGCATGTTAAGGCTCTGCATGAGATGAGAGGTCGACTCAACGATGGAGGCTGAAAATAAAGCTTGATGTTAAGAACATGCCATTTATGTATGGGTTTAGT
TTGTGTTGGAGCCAAGCTGCCAGATCGTGTGGTCCCTGTTGAATTTAACTTCCAAATATTACTGCCAGCATCCGGCCTCCTCAACATCAGATCAGTGTTT
CAGATTGAAGGAAAAAACGCATGTCCTCCCACTAGGAGTGGTTAGTGGTTCATTCTTGAGCATACCAGAAGAAACACGTGCGGTACCACGTGATTATCAC
TGGCTTAACTCTTTATGTAATTTTTTGCTTGAACCTTAATCCCACCCCTTCTATGGGGAAATGTAATGCCTTTAAAATATCAAATGTCACTATGACGTTA
TATCTTTTTTAATTTGAGTTATCAAGTGTCACCCCGTAGCGTTAGCACGGGCATATTACT