Detailed information on CNT30552380


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000279, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595455Oryza glaberrimaOryza meridionalis14.323.9594.44216forward
CNT30110178Oryza glaberrimaOryza longistaminata60.7548.4799.13918reverse complement
CNT30100012Oryza glaberrimaOryza rufipogon94.0456.199.31421forward
CNT30574808Oryza glaberrimaOryza barthii85.6493.599.921294forward
CNT30117877Oryza glaberrimaOryza nivara92.1295.0299.281392forward

Expression of CNT30552380

Peptides detected in this lncRNA

>peptide 1 (71 aa)
SKPNRKAHLHHLLPLLSFSRSPLLSLTFSPAPPLPRQRRRPPLRRLPRPTPATPLAVAGLNQLLGSSLLCP*

>peptide 2 (54 aa)
QSPTEKPTYTTFFLFSLFLVLPFSPSRSLQRRRFLGSAGDLPCAGCHAPLRRPL*

>peptide 3 (41 aa)
MWFSSSFRNPSLLFYCCSSGSKVILLELSFSTLSLVDCSPS*

>peptide 4 (35 aa)
VKAQQKSPPTPPSSSSLFFSFSPSLPHVLSSAAAS*

>peptide 5 (35 aa)
MISISTMHMHNICDAYCIKFLENMYVCRPVVVNCK*

Sequence

>CNT30552380
GTCAAAGCCCAACAGAAAAGCCCACCTACACCACCTTCTTCCTCTTCTCTCTTTTTCTCGTTCTCCCCTTCTCTCCCTCACGTTCTCTCCAGCGCCGCCG
CTTCCTAGGCAGCGCCGGCGACCTCCCCTGCGCCGGCTGCCACGCCCCACTCCGGCGACCCCTCTAGCCGTCGCCGGGCTGAATCAGCTTCTTGGCTCCT
CACTTCTCTGCCCCTAAGCTAACCCTAGCCTCTGACCTCTTCAACCTAAGATGCAACCGGCGGCCAATTCTGGCGAGATAAGGATTTAGGGAAGTTTCCC
AGACCCCTACCGCTGGATCTACTCTCCTCCCCTATTTTAATTTTTGGTTACCTCTGATGATCCTACCGTGATTGAAAAATATGTGGTTCAGCTCCTCCTT
CAGAAATCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCTAAGGTGATTTTGCTAGAACTGAGCTTCTCCACCTTGAGCTTGGTTGATTGTTCCCCC
TCTTGAACTGAACCCCCTGCTCTACTTGGAACTCAGGTAATTCTCCTCCTTGGCTCTTGCTCTACTGGTAATACTTGACTGCTTCCTGACAGGATCTGCT
ACTGGTGATTCTCTTCCTCCTCTTGAGACTAATCCTCTTTCTTGATTTTCGCTCTATCTTGCTTCTTGACCTGAGTTTCATCTCCTCCCATAGTTGGAGT
TCATCCAAGAACTGAACACCTCTACTTTTCCTTCAGATTTGGTTCACCACTCTCTGATTGCTTGGCCATGGTTACTACTACTTGTTGATTCATGTATTGG
TTTGAGCTGGACTTCAGTTGAGCTATTTCTGTCCGGGTGGAGCTAACATTCTAGCTGATTTTGCTAAGCTTGGTTCTATGATTCTAACTACTACTGCCGC
AGCTGCTGCTATTGCTCTACTGCGGTAGGTGCTTGAGGTGGTTTTCCAGCCGATGCAACCGAGGCTGGGGTTCACTGAATAGCTTGGTTGATATATATGT
GAATTTGGTGAAGACTAGGTGACTCACCTACTTTAGTTTTGGTGGTTGTTTCACTGACTGACACCTAAGCAGTGCTTGATCGGTGGAGTAACGTGGGATT
TCACTAAATTTTTCTAGTTACATAAATTCTGATACAATTAGGTACTTTTGCACTTGAGTCCCTCAGGGTCTCTAAAATTGAAGGTTACTCTGAGATTAGG
GACTGATTTGTAATTGTTCTAGAACTCAAGAGTTTTTCTGAAAACTAAATAATTATTGAATCTTTGACTGAGATGGTTCAGTTTATGATATGATATCCAT
AAGCACCATGCATATGCACAATATATGTGATGCATACTGTATAAAATTTCTAGAGAACATGTATGTATGCAGACCTGTAGTGGTAAATTGTAAATAAAGA
ACTGTGATTTCTACTGTGCACATGTGTACCTCGCTTCATAACATCTAATCTACGCTATAGTTTAACTAAAACTAAATTATCCCACTCCTCACCAGGTTTA
CTAACTAAAAA