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Detailed information on CNT30552325


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 2e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186317Oryza glaberrimaSecale cereale39.5536.9490.79369forward
CNT30299182Oryza glaberrimaTriticum aestivum38.5933.8794.44360forward
CNT30440100Oryza glaberrimaAegilops tauschii38.5935.2994.17360forward
CNT30665579Oryza glaberrimaTriticum dicoccoides50.1648.5590.81468forward
CNT30685359Oryza glaberrimaTriticum urartu51.1347.5187.84477forward
CNT30362364Oryza glaberrimaSorghum bicolor38.5935.3693.61360forward
CNT30369221Oryza glaberrimaOryza glumipatula50.1669.8599.57468forward

Expression of CNT30552325

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MKAMDLTAVARRRSTLTCRGRSWWRRPMRCC*

>peptide 2 (29 aa)
MAHRQWITSSSRFLANVSGSADSPAVSQP*

>peptide 3 (29 aa)
LFESAYISMYHGVFRSIPPGKLISQEQIR*

Sequence

>CNT30552325
ATTATTTGAGTCCGCGTACATTTCCATGTACCATGGGGTATTCCGTTCCATACCGCCAGGCAAACTGATTTCCCAGGAACAAATCAGATAAAAATTATTT
TACACAATCAGGTCCATTGTACTTCTTTCATCAACCAACCAGATAACATTGTTTTACACAATCTGAACGAACGAAGCAAATATTCGGGTACGCGGAAAGA
GGAGAACGTCGCGCGTCTCACCGCAGCCTGCATGAAAGCAATGGACCTCACCGCCGTTGCTCGCCGGAGATCCACACTCACTTGCCGGGGACGAAGTTGG
TGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAACGCCTCGGGGTCGTCGGCGAG
GCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGACGCGCCCCCCCTCGCTGAAGATCTGGGACCCC
GCCTTGAACCACACGGCCTCGCCGAACTTCACGCCGTTGCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATGGCCCACCGGCAGTGGA
TCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCCGACAGCCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGCGGGCC
GAGGTAGAGCACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCCGCGGCGGGCTTGGGCTTGGCCGCCGACTTGCGCATCGTGACGCGGCCCTCGCCG
AACACCTTGGCATTGGCGACCGCCTTGCCGGCGAGGGCGGCAGGGGAGGAGAGTGCCATGGTGGACGCCGCCATTGACGCGAGCCTAGGACTAGGAGGAG
ATGGCCACAGATGCTTTTGGAATGTGTGTCTTT