CANTATAdb - search

Detailed information on CNT30552324

BLAST search results

BLAST vs Swiss-Prot:
sp|P06671|CB22_MAIZE, E-value = 1e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30186481	Oryza glaberrima	Secale cereale	70.6	59.1	91.1	562	forward

Expression of CNT30552324

Peptides detected in this lncRNA

>peptide 1 (95 aa)
IPFHTARQTDFPGTNQIKIILHNQVHCTSFINQPDNIVLHNLNERSKYSGTRKEENVARLTAACMKAMDLTAVARRRSTLTCRGRSWWRRPMRCC*

>peptide 2 (29 aa)
MAHRQWITSSSRFLANVSGSADSPAVSQP*

Sequence

>CNT30552324
GTATTCCGTTCCATACCGCCAGGCAAACTGATTTCCCAGGAACAAATCAGATAAAAATTATTTTACACAATCAGGTCCATTGTACTTCTTTCATCAACCA
ACCAGATAACATTGTTTTACACAATCTGAACGAACGAAGCAAATATTCGGGTACGCGGAAAGAGGAGAACGTCGCGCGTCTCACCGCAGCCTGCATGAAA
GCAATGGACCTCACCGCCGTTGCTCGCCGGAGATCCACACTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGC
GAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGACGCGGTACCCCTCGACGGCGCCCATGAGCACGACC
TGGCAACCCCAGATCGCCAGGATGCTCTGCGCGTGGATCAGGCTGGGGTTGCCGAGGTAGTCGAGCCCCCCCTCGCTGAAGATCTGGGACCCCGCCTTGA
ACCACACGGCCTCGCCGAACTTCACGCCGTTGCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATGGCCCACCGGCAGTGGATCACCTC
CAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCCGACAGCCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGCGGGCCGAGGTAG
AGCACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCCGCGGCGGGCTTGGGCTTGGCCGCCGACTTGCGCATCGTGACGCGGCCCTCGCCGAAC