Detailed information on CNT30552322


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690183Oryza glaberrimaOryza sativa102.24100.3196.55319forward
CNT30391813Oryza glaberrimaTriticum turgidum68.5968.1585.98214reverse complement
CNT30445279Oryza glaberrimaSaccharum spontaneum49.0426.286.93153reverse complement
CNT3066721Oryza glaberrimaLeersia perrieri65.7165.585.85205forward
CNT30623316Oryza glaberrimaDaucus carota26.2826.9786.5982forward
CNT30339268Oryza glaberrimaEragrostis tef48.7251.8887.5152forward
CNT30369487Oryza glaberrimaOryza glumipatula101.28105.6989.87316forward
CNT30108933Oryza glaberrimaOryza longistaminata100.64101.2992.36314forward
CNT3099765Oryza glaberrimaOryza rufipogon102.24100.3195.92319forward
CNT30574593Oryza glaberrimaOryza barthii100100100312forward
CNT30115823Oryza glaberrimaOryza nivara102.24100.3196.24319forward

Expression of CNT30552322

Peptides detected in this lncRNA

>peptide 1 (32 aa)
PSSVARACNPSGGTKVAADVLVWILILVPMLL*

Sequence

>CNT30552322
GCCGAGCTCAGTAGCGAGAGCCTGTAACCCAAGCGGGGGCACTAAGGTGGCTGCGGATGTTTTGGTGTGGATTCTGATCCTGGTCCCCATGTTGTTGTAA
TCTTGCTGGCTTGCCCGTTCCAAGTTGCGTAGTGGGCCGAGGGGCTTTGGCGAAGGCCTTTGCTTCTCCGGCCCTAAAGTGGCAGGCACAGTGTGAGGCT
GGCTTCACAGAGCAGCGATCACTGCCCGCTTCCATCGGTGGAAGGATAACAGGCTGCTGCACCTTGGGCCCGCTTCTGGCCTAGAGTCCCTCTACAACAG
ACCACCATCTTT