« Back to Oryza glaberrima search


Detailed information on CNT30552314


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369227Oryza glaberrimaOryza glumipatula43.7810099.81538forward
CNT3099633Oryza glaberrimaOryza rufipogon58.9910099.72725forward
CNT30575063Oryza glaberrimaOryza barthii61.2710097.61753forward

Expression of CNT30552314

Peptides detected in this lncRNA

>peptide 1 (42 aa)
CALEFLWAELKSQGHEQIDFARGKNPRNLLPSTHTHRPITPT*

>peptide 2 (29 aa)
MSSRSRSSSSAKSPSSMSSVKSTSCSPFM*

Sequence

>CNT30552314
AATGTGCGTTGGAGTTCTTATGGGCGGAACTGAAATCTCAAGGGCACGAGCAGATTGATTTTGCTCGGGGAAAAAACCCAAGAAATCTCCTCCCAAGCAC
CCACACTCACAGGCCCATCACACCAACATGAATAACTTTAGCAAGCTCTTAATTCACACGCAGAAATCCACCTGCCGGAACATATCACCACGGCCGAAGT
CGTAGCCGCTGGGTATCTCTGGGAAATCCTCGCAGAAGTCATCACCGATGTCGTCTAGGTCGAGGTCATCTTCTTCAGCGAAGTCTCCAAGCAGCATGTC
CTCAGTGAAGAGTACGTCTTGTTCGCCATTCATGTAAGCCGGCACATCGGAGATATCCAGAGCATCCAGCCCAGCTCGGAAATCCATCGGGTCAATGTCC
GGCAGCTGTAGACCGCGCAGTATATCCTTGTAGAACTCTGGGTCATCCGGCAGCTCGGCGGTCTCGTTGGTAGCCTCCACCAGGAGGGGAGTTGCAGCTT
GCTCCGGCAGCGGCGGCGACTCTGGCTTTGGAGCTGGCTTGGTGGCTTCGAGCACAGACGACGGCGAAGGGTGGGCGAATGGCGCGGCAGAAGTCGAGGA
CGACGAGGACGCAGTCGGAGTAGGGGTCGCCGAACTAGCAGGTGAGGCAGAGGAGGCCACACCACGGCGGCGCTTCTCTTCGGCGAAGTTGCGGGAGGCA
GCGACGGTGGACGCCGGAGAGGCCTGCTTCGTCGACGAAGCTGGCTTGCCAATGAAGAGCTCAAAGTAGCGCTTCTTTGAGGCGGCGCCGGCGTCCTCGT
CGTCGTCAGAGTCGGAGTCCGTCGCGTCAGGGTCCTCGAACACGACGCGGACGCGACGGCTTGGCTGCAGGGAGGCCGCCGCCGACGGCACATGGGGCCT
GGAGAAAGCAGCAGAGGGTTTAAGGCCAAACCCGGATAGCCTCTTCGTCTTGGGCTTCTTCGCCATCACCTTCTTGAGGAGCATCTGCTGCTGCTTGGAA
GGGGCCATTTCTCTCTTCTTCTAACTCTTGCCGGAAAAGAACTCTAAAATTCCTCACCAAAACTGACAAAACTGAAGGGGAAAAACTCTAAAAGGGGGAA
ACTTTTTTTTTCTCTTGTGCAAAAATTTGACGGAGACGAACACGAATCGATCGAATCCGTCAATCTCCTCGACAGAAACCACACGGCCTTATGTGGAGGA
ACCCGGAATACTTGACCCCGAACCCGTCC