Detailed information on CNT30552312


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005559, E-value = 2e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690372Oryza glaberrimaOryza sativa11.0228.6794.72246reverse complement

Expression of CNT30552312

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MWLSVLVMVILCIALSQFFFFEAFSRLPLSKYI*

>peptide 2 (81 aa)
IPRRILLPSSLSRLSPRLPQTPPPPSPPPDTVASPRPPYRAQPLPSSLSRLTGGRDWHPRRRRRWLLGRLLLVNSGGPPRV*

>peptide 3 (73 aa)
QSRAASSSLPLSLAYRLASPRRRRRRRLPQTLSPRLARPIEPNPSLPHFRASPGGGTGILAGDGDGYSAAFSW*

>peptide 4 (70 aa)
MLHAYVVIHAFCTTFLDSSIMLHVSVVIHAFCNLQISDIQIRHVRFPLYCQMWLIVFLKNFARTITLFVK*

>peptide 5 (50 aa)
MSHDTSARREATDTPPPPSVKASRGREHSLSVLRTSSGTYSIMSIQKHTL*

>peptide 6 (40 aa)
MLCLQINRECTDQLKFPLFCYRKYLLHLNRDVTLYALASC*

>peptide 7 (39 aa)
MIRLQGEKRRIHHRRHLSRPREAENILSRYYEPAQEHTL*

>peptide 8 (38 aa)
MPPAELHGGAHHPFNRAHSPASKLHHRPYPRRVLRIFC*

>peptide 9 (38 aa)
MDPLIFSNFIGFFSRIKEIGHTPGLIHAHTDLCGCLSS*

>peptide 10 (83 aa)
MPALLSILLRFYRLVGGLGPWSFLLLILPSCYMHMWLFMLSAQLFLILLSCYMYLWLFMLSAICRSLISKYDMSASHYTAKCG*

>peptide 11 (86 aa)
NPAPHPPPFLSLSPIASPPPDAAAAVASPRHCRLASPALSSPTPPFLTFAPHRGAGLASSPATAMATRPPSPGEQWGPTSRLGSPW*

>peptide 12 (86 aa)
MPLNNHILAEWKFNPGVNLAYFFVSAAVIMLTFFLAMLVPCAQLTINFQYDSFNIFDDAERNIPNHELLIVLCAGGQVKPPNGSQI*

Sequence

>CNT30552312
CAATCCCGCGCCGCATCCTCCTCCCTTCCTCTCTCTCTCGCCTATCGCCTCGCCTCCCCCAGACGCCGCCGCCGCCGTCGCCTCCCCCAGACACTGTCGC
CTCGCCTCGCCCGCCCTATCGAGCCCAACCCCTCCCTTCCTCACTTTCGCGCCTCACCGGGGGGCGGGACTGGCATCCTCGCCGGCGACGGCGATGGCTA
CTCGGCCGCCTTCTCCTGGTGAACAGTGGGGGCCCACCTCGCGTTTAGGAAGCCCGTGGTAGTGCTGGTGGTGGTACCATCGGTAGGCCCTGGAAGCGTT
GTAGAAGCGGTGGTCGCTGCCATGCCTCCGGCCGAGCTCCACGGCGGTGCCCATCATCCCTTCAATCGTGCCCACTCTCCAGCATCAAAGCTCCATCATC
GCCCCTATCCTCGCCGCGTTCTACGCATCTTTTGCTAGACGCGGCATGCTCTCCACGAATCCACCAATGGCATGCCTCGCCTCACTGGCTCGCTTCTGAG
AGCAGGTACAATAGCAGGCTATTAACCAGCTATAAACATATTTTAATAAGATAAACGATGAGAGAGAAGAGTAGCGGGCTACAGATCTGTAGCCAGCTGC
AGCACGGACTCCAAGACACACTGTGTGTATGATAGGTGGGACCATATATTAATAGTATAGTAAGCAACTATTGTATAAATTGACTATTAGATTGGCTATA
GATGAATTGGAGCTATTAGTGGGCTGTACTATTAGACTTGCTCTGAGTCATCGTCCTGACTATGCCGGCTTTGCTCTCCATCTTGTTGAGATTTTACAGG
TTGGTTGGCGGCCTTGGACCTTGGTCATTTCTTTTGTTGATTCTTCCCTCATGTTACATGCATATGTGGTTATTCATGCTTTCTGCACAACTTTTCTTGA
TTCTTCTATCATGTTACATGTATCTGTGGTTATTCATGCTTTCTGCAATCTGCAGATCTCTGATATCCAAATACGACATGTCCGCTTCCCACTATACTGC
CAAATGTGGCTAATAGTTTTTTTAAAAAATTTTGCTAGGACTATTACTTTATTTGTTAAGTGATCAGATTTACATAGTATGTTATGCCTGCAAATTAATA
GAGAATGCACTGATCAACTTAAATTCCCGCTTTTTTGTTACAGAAAATATCTTCTTCATTTGAATAGAGATGTGACCCTGTATGCTCTTGCTTCGTGCTA
GCAGTGCATGGCATGCATTTGACATTTTTTTTTAAAGCGGGCAATTAATATATGGATCCTCTAATCTTTAGTAATTTTATTGGTTTCTTTTCGAGAATAA
AAGAGATTGGGCACACTCCAGGACTGATTCACGCACATACGGATTTATGTGGTTGTCTGTCCTCGTAATGGTAATTCTGTGCATTGCACTATCGCAGTTC
TTCTTTTTCGAAGCCTTTTCTAGGTTGCCATTATCAAAATATATCTAATTTGCAGAATATATACTAGGTGGTGGAGATTTTATTTCCTTCAGGGCATAGA
TGTTGCAAGCTATTGCAAAAGCTTATGCCTCTAAACAATCATATTCTTGCAGAGTGGAAATTTAATCCGGGGGTAAATCTTGCATATTTCTTTGTTTCAG
CAGCAGTTATTATGCTCACATTTTTTCTAGCAATGTTGGTTCCATGTGCACAACTCACTATTAACTTTCAATATGACAGTTTTAACATATTCGACGACGC
TGAACGTAACATCCCAAATCATGAATTGTTGATTGTTCTATGTGCTGGTGGCCAGGTGAAGCCACCTAATGGTTCTCAAATCTAAGTTGTGATGTGGCGG
TGATGAGCAAGCTTGGACAAGAGCCCAAATAAGATATGACTTAAAGTGGTGCAAGTTAATCAGGACAGCAAAGACGCTTAGTCTTATGAAGAAATGTCAC
ATATACAGGAAAGGATGAGATTGGCCAAAATGTTTTTTTAGTCTTCTGATTTGCAGATGCTTGATTGGAGTTATCCTGCTCCTGCCACAAACAGGAAATG
AGCCATGATACGTCTGCAAGGAGAGAAGCGACGGATACACCACCGCCGCCATCTGTCAAGGCCTCGAGAGGCCGAGAACATTCTCTCTCGGTATTACGAA
CCAGCTCAGGAACATACTCTATAATGTCCATTCAAAAACATACTCTGTAATTTCAGAGAGGAGTAAGTGCCAATATAATGGTTTTAATTAACATCCAAAC
AATATAGACAGAATGCGAGCATGTGATACTTCT