Detailed information on CNT30552306


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187975Oryza glaberrimaSecale cereale51.2439.5595.47331forward
CNT30393967Oryza glaberrimaTriticum turgidum51.755.6794.31334forward
CNT30140865Oryza glaberrimaLolium perenne30.837.3490.95199forward
CNT30129613Oryza glaberrimaCorymbia citriodora51.2445.2293.35331forward
CNT30684690Oryza glaberrimaTriticum urartu50.4651.4289.57326forward
CNT30369202Oryza glaberrimaOryza glumipatula96.1369.799.68621forward
CNT3099641Oryza glaberrimaOryza rufipogon53.7278.15100347forward
CNT30574663Oryza glaberrimaOryza barthii83.2865.3799.07538forward
CNT30115779Oryza glaberrimaOryza nivara80.0398.48100517forward
CNT30603587Oryza glaberrimaOryza punctata77.7198.8294.42502forward

Expression of CNT30552306

Peptides detected in this lncRNA

>peptide 1 (33 aa)
EIDILFCVFACDYLSPRTFPCTMGYSVPYRQAN*

>peptide 2 (31 aa)
MKAMDLTAVARRRSTLTCRGRSWWRRPMRCC*

>peptide 3 (74 aa)
MAWTKNPNMENMARRPFLISFTLSSANASGSSARSSGKTQPSAPSMAHRQWITSSSRFLANVSGSADSPAVSQP*

Sequence

>CNT30552306
CTGAAATTGACATTTTGTTTTGCGTTTTTGCATGTGATTATTTGAGTCCGCGTACATTTCCATGTACCATGGGGTATTCCGTTCCATACCGCCAGGCAAA
CTGATTTCCCAGGAACAAATCAGATAAAAATTATTTTACACAATCAGGTCCATTGTACTTCTTTCATCAACCAACCAGATAACATTGTTTTACACAATCT
GAACGAACGAAGCAAATATTCGGGTACGCGGAAAGAGGAGAACGTCGCGCGTCTCACCGCAGCCTGCATGAAAGCAATGGACCTCACCGCCGTTGCTCGC
CGGAGATCCACACTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCCAGGTTCTCCAGTGG
CCCCTTGCCGGTGACGATGGCCTGGACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAACGCC
TCGGGGTCGTCGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATGGCCCACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACG
TCTCCGGGTCGGCCGACAGCCCGGCGGTGTCCCAGCCGTAGTCGCC