Detailed information on CNT30552286


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000177, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3066724Oryza glaberrimaLeersia perrieri19.0344.5287.69130reverse complement
CNT30595465Oryza glaberrimaOryza meridionalis83.4695.6495.26570forward
CNT30369297Oryza glaberrimaOryza glumipatula91.6510099.36626forward
CNT30106043Oryza glaberrimaOryza longistaminata42.1781.1397.92288forward
CNT3099917Oryza glaberrimaOryza rufipogon99.7199.7199.41681forward
CNT30574627Oryza glaberrimaOryza barthii85.51100100584forward
CNT30115788Oryza glaberrimaOryza nivara93.8599.8499.06641forward

Expression of CNT30552286

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MDPAERVVKAAWYKGAVVTHRPKPVSPIVNQSKNKNKQAKKPKPAAPSKK*

>peptide 2 (34 aa)
KTTDSPLSGWTPEPLIDPRSNQESQRIFRCQFGH*

>peptide 3 (36 aa)
MYVCCENKMIEILYSVMFILTSWLKFGINYFWKQRHY

Sequence

>CNT30552286
AAAAACCACAGATAGCCCTCTGAGTGGATGGACTCCAGAACCACTGATCGATCCAAGATCTAATCAAGAATCTCAGCGCATTTTCCGTTGTCAGTTCGGC
CATTAAGCCCCATATATAAGCCTCCTGATAATATCAGTAGGAGAAACAGGCCATTGTGGATATATACAAGCACAGAAGAACAAGTAAATATAATCGACAG
AGAACTGAAGCCGACGAGGTCTCGACAGGCGAAATATGGATCCTGCAGAGAGAGTGGTGAAGGCGGCATGGTACAAGGGCGCTGTCGTCACTCATAGGCC
GAAGCCTGTTTCGCCTATCGTTAACCAGAGCAAGAACAAGAACAAGCAAGCCAAGAAGCCCAAACCAGCTGCACCCAGCAAGAAGTGATAAACTTAACTG
GCTGCCTGCCTCTACTACACAGTATGTATGCAAACCGAAAGACTGGCTAATTAGGGGGTTTAATCTTCAGGATTCAGTTCAGGTTTGAGCTGAACACTGA
AGAAGTGAAGAGTACTTGGATACAGTTAATTTTACCTGTTCAAACTTCAAACAGTCCTACAGGATGCCGGATGTATGTGTGTTGTGAGAATAAAATGATT
GAGATACTATACTCTGTGATGTTCATATTGACCTCCTGGTTGAAATTTGGAATAAATTATTTCTGGAAACAAAGGCATTATTT