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Detailed information on CNT30552265


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002550, E-value = 2e-161

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30111334Oryza glaberrimaOryza longistaminata46.8888.7397.34488forward
CNT3099505Oryza glaberrimaOryza rufipogon44.7650.4397466forward
CNT30574820Oryza glaberrimaOryza barthii60.5265.996.98630forward
CNT30115748Oryza glaberrimaOryza nivara43.1354.3696.66449forward

Expression of CNT30552265

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MTASSYRLLHFAIMSLSCFRHSYNFRKVEEDV*

>peptide 2 (37 aa)
MCFTVCEHGVCESENYVFWCWCVLEMKICLMYCNLVR*

>peptide 3 (32 aa)
FIQPSIAEGYDGHEAVSRALSIDHLRFWATSS*

Sequence

>CNT30552265
TTTTCATCCAGCCGTCCATTGCTGAGGGGTACGATGGGCATGAGGCTGTATCGCGTGCGCTATCCATAGACCATCTCAGGTTTTGGGCGACCTCATCCTG
AAGCGCCATAGCCATCCCACGACCAAGCAGGCATCAAGGGTTACCGACCCGCTCGACCGGAAGCGCCGCCGCGGCAGGTGCACGGGCTACCTCCGGTGGA
CGTTGCCGCCGCCGCAGTAGGGGCAAGTCGCCAACGCCGCCCTCCACGGCCGCTGCTGGAGCCGTCGCCACCGCCGCAGGAGTCAACCGCCGCCGCAGGT
GCACGTCGCCCCTGCCGCCGTGGGGGCACGTCGCCAACGCCGCCCCCCGCGCCCGTCGCTGCCGCCGCTGCAGGTGCTCGTCGCCCCTGCCGCCGACTCC
TGTGATTTCATCGCTCTCGTAGAGGCAAACTCTTTATGGGTGAAGATATGGCAGACAATTTCAGGACCCTGAGGAGGAAGAGGAGTATCGTACGATTACT
GCTATGAGATTCAAGACTGAGGATGACGGCTTCAAGTTATAGGCTATTACATTTTGCAATCATGTCTCTAAGTTGTTTTCGTCATTCCTACAATTTCAGG
AAAGTAGAAGAAGATGTGTGAGATGGATAAGAAGTAGAAGCAGCCCTTTGCTATGCACTTTACATAGTTTTGTCATGCTCTTGGTCCTAATGAATACATT
GGACTGTAATAAATCTTGATGTGCTTTCCTGTAGTATGATGGATGTACTACTATTTTGAGTTGTGCTCGCATGGTTGAATTTTGATGTGTTTTACTGTAT
GTGAACATGGTGTATGCGAATCTGAAAATTATGTGTTTTGGTGCTGGTGCGTTCTGGAAATGAAGATATGTTTGATGTATTGCAATTTGGTGCGCTAAAT
TGTTTACTGTATGTGAGTATGAAGTTGTGCTAGCAAATTTGGTAATTGAGCCAATATTGCTTGATATGCTTGAGACTGACAGCCGGATGGTTCTAATTTA
TTTGAGATTTGAGAAAAAAAATTGCATTCATAACAATACAG