Detailed information on CNT30552242


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674416Oryza glaberrimaSetaria viridis16.4320.3595.6569forward
CNT3014691Oryza glaberrimaZea mays18.126.4890.7976forward
CNT3066598Oryza glaberrimaLeersia perrieri26.918.7791.15113forward
CNT30595484Oryza glaberrimaOryza meridionalis101.4382.493.43426forward
CNT30603545Oryza glaberrimaOryza punctata32.1425.6297.04135forward

Expression of CNT30552242

Peptides detected in this lncRNA

>peptide 1 (36 aa)
PVIIRTSFIIFRSRIYFSYTPLSVRSDRTEKKVLIS*

Sequence

>CNT30552242
CCGGTGATAATTAGGACAAGCTTTATTATATTCAGGTCACGAATTTATTTTTCATACACCCCCCTCTCTGTTCGTAGTGATCGCACAGAGAAGAAGGTGC
TAATTAGCTAAGCTCCGTGTACGCACGTACACACGCACGCACGATATACACGTAGAGCTAAGCCACCACATGACCACCACGACTACGTACGGGCACACAT
ATACGTACGTACGTACACGGGTACACACAGCAGGTTCGATCAGTCGGACTTGAGCAGGAAGCTCTGCTTGCGCTCGCGGAACTCGCCGGTGCAGGTGTTG
AAGTCCTCCTCCACCTTGGTCTCGCGCACCATCAGGTAGTCGTTGCCGTGGTTGTGGTTGTGGTTGTGGTGTTGTGATGAGCGAGAGATGGTTAATTAGG
GTTTTGGTGGTGTACGGGAT