Detailed information on CNT30552193


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674803Oryza glaberrimaSetaria viridis34.1122.7285.47117forward
CNT3066768Oryza glaberrimaLeersia perrieri34.9936.3690120forward

Expression of CNT30552193

Peptides detected in this lncRNA

>peptide 1 (29 aa)
HILINIQTAASHINKITDSSRLRTKNRKK*

>peptide 2 (49 aa)
MEFVWQHKDGTTVIRLLSHSSSSSSSSSSAPAEELRAFNLSMRLAFLCS*

Sequence

>CNT30552193
AACACATTTTGATCAATATCCAAACGGCAGCTTCTCACATAAATAAGATAACCGATAGCTCCAGGTTGAGAACCAAAAACCGAAAGAAATAGGTTCTTTG
AGCGGAGTTCAGAACATAAACAAAAATGCCTGTTGCAACTTGCAAGACTATACAGGTGAACTTAAATGCCATATGGAGTTTGTTTGGCAGCATAAAGATG
GAACTACTGTGATAAGGCTACTCTCTCACTCGTCATCCTCTTCCTCGTCATCATCATCAGCACCAGCTGAGGAGTTGAGAGCATTCAATCTTTCGATGAG
ACTGGCCTTCCTCTGCTCGTAGGTCAGCTTCTTGAGGTTGTAT