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Detailed information on CNT30552192


BLAST search results

BLAST vs Swiss-Prot:
sp|P06671|CB22_MAIZE, E-value = 3e-108

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641294Oryza glaberrimaNymphaea colorata55.1845.2188.65458forward
CNT30186790Oryza glaberrimaSecale cereale66.6358.8391.86553forward
CNT30665098Oryza glaberrimaTriticum dicoccoides66.6368.2792.04553forward
CNT30345516Oryza glaberrimaEragrostis tef55.1861.5694.54458forward
CNT30603508Oryza glaberrimaOryza punctata57.1160.6992.83474forward

Expression of CNT30552192

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHRQWITSSSRFLANVSGSADSPAVSQP*

>peptide 2 (29 aa)
LFESAYISMYHGVFRSIPPGKLISQEQIR*

>peptide 3 (31 aa)
MKAMDLTAVARRRSTLTCRGRSWWRRPMRCC*

Sequence

>CNT30552192
ATTATTTGAGTCCGCGTACATTTCCATGTACCATGGGGTATTCCGTTCCATACCGCCAGGCAAACTGATTTCCCAGGAACAAATCAGATAAAAATTATTT
TACACAATCAGGTCCATTGTACTTCTTTCATCAACCAACCAGATAACATTGTTTTACACAATCTGAACGAACGAAGCAAATATTCGGGTACGCGGAAAGA
GGAGAACGTCGCGCGTCTCACCGCAGCCTGCATGAAAGCAATGGACCTCACCGCCGTTGCTCGCCGGAGATCCACACTCACTTGCCGGGGACGAAGTTGG
TGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCC
GCCGGCGACGCGGTACCCCTCGACGGCGCCCATGAGCACGACCTGGCAACCCCAGATCGCCAGGATGCTCTGCGCGTGGATCAGGCTGGGGTTGCCGAGG
TAGTCGAGCCCCCCCTCGCTGAAGATCTGGGACCCCGCCTTGAACCACACGGCCTCGCCGAACTTCACGCCGTTGCGGGCGAGGAGCTCCGGGAAGACGC
AGCCGAGCGCGCCCAGCATGGCCCACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCCGACAGCCCGGCGGTGTCCCA
GCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGAGCACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCCGCGGCGGGCTTGGGCTTGGCCGCCGAC
TTGCGCATCGTGACGCGGCCCTCGCCGAAC