Detailed information on CNT30552167


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30105740Oryza glaberrimaOryza longistaminata42.6117.9592.74124forward
CNT3099807Oryza glaberrimaOryza rufipogon10029.1999.66291forward
CNT30574695Oryza glaberrimaOryza barthii64.637.699.47188forward

Expression of CNT30552167

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MANPRPNPYPEKRNNTISTDFFLEGITFRIVMLMQPLDSG

Sequence

>CNT30552167
TTTTCTCAAGTCATCCTACTGAGTTGGCGACTAGTAGGTGTTAATTGCTGCTAGTTTTCCTACTGAACATACCTAACAATACTGTTATGGGTGAATTTTT
GTAGGCTCAGATTTTCTTACTGAAGAAATAACAGAAGCAATCGATGGAATAACTCAACAACATCTCAGCAATGGCCAACCCAAGGCCGAATCCCTATCCA
GAAAAGAGGAACAACACAATATCTACGGATTTCTTCTTGGAAGGGATCACATTCAGAATTGTCATGTTGATGCAACCTTTAGATAGCGGAG