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Detailed information on CNT30552163


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SAD4|ESR1_ARATH, E-value = 6e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522945Oryza glaberrimaSetaria italica16.1723.7787.79131forward
CNT30455895Oryza glaberrimaSaccharum spontaneum20.1218.4287.12163forward
CNT30364010Oryza glaberrimaSorghum bicolor20.1225.7187.12163forward
CNT30109962Oryza glaberrimaOryza longistaminata27.7876.5399.11225forward
CNT30574938Oryza glaberrimaOryza barthii45.9368.51100372forward

Expression of CNT30552163

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MAGEGVADLRRPLAPLPEAHTTVAGAPNLADVGVGSDGGRRRGLLRRRSWLANEELKVALL*

>peptide 2 (41 aa)
AAKVEDDEDAVGVGVAELAGEAEEATPRRRFSSAKLREADW*

Sequence

>CNT30552163
GCGCGGCAAAAGTCGAGGACGACGAGGACGCAGTCGGAGTAGGGGTCGCCGAACTAGCAGGTGAGGCAGAGGAGGCCACACCACGGCGGCGCTTCTCTTC
GGCGAAGTTGCGGGAGGCAGACTGGTAGGCGGCGGAGGCCGCATCAGCAGTGTCAAAGGTGCCAAGCCACTCCCTATGGCCGGTGAAGGGGTTGCGGATC
TCCGCCGCCCACTTGCCCCACTTCCGGAGGCGCACACCACGGTAGCAGGTGCTCCCAACCTTGCCGATGTTGGCGTAGGCAGCGACGGTGGACGCCGGAG
AGGCCTGCTTCGTCGACGAAGCTGGCTTGCCAATGAAGAGCTCAAAGTAGCGCTTCTTTGAGGCGGCGCCGGCGTCCTCGTCGTCGTCAGAGTCGGAGTC
CGTCGCGTCAGGGTCCTCGAACACGACGCGGACGCGACGGCTTGGCTGCAGGGAGGCCGCCGCCGACGGCACATGGGGCCTGGAGAAAGCAGCAGAGGGT
TTAAGGCCAAACCCGGATAGCCTCTTCGTCTTGGGCTTCTTCGCCATCACCTTCTTGAGGAGCATCTGCTGCTGCTTGGAAGGGGCCATTTCTCTCTTCT
TCTAACTCTTGCCGGAAAAGAACTCTAAAATTCCTCACCAAAACTGACAAAACTGAAGGGGAAAAACTCTAAAAGGGGGAAACTTTTTTTTTCTCTTGTG
CAAAAATTTGACGGAGACGAACACGAATCGATCGAATCCGTCAATCTCCTCGACAGAAACCACACGGCCTTATGTGGAGGAACCCGGAATACTTGACCCC
GAACCCGTCC