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Detailed information on CNT3055216


BLAST search results

BLAST vs Swiss-Prot:
sp|P27495|CB24_TOBAC, E-value = 3e-124

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514140Amborella trichopodaJuglans regia45.7541.481.16414forward
CNT30628823Amborella trichopodaVigna unguiculata45.4180.4381.27411forward
CNT30171121Amborella trichopodaTrifolium pratense49.0650.5781.31444forward
CNT30725369Amborella trichopodaLupinus angustifolius50.834680.43460forward

Expression of CNT3055216

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MMQDHHDTTHNAITLTNPFHRRKKKRKEKKNHFPGTKLVA*

>peptide 2 (71 aa)
MAHLQWMTSSSLYLTLSRPYHGLPDTGALLVLFLMLTLPSPRTPIPNSDWVLAGTALPANAGEERAIVAMS*

Sequence

>CNT3055216
GGAAAAAAAGGAAAATATTTGATTAATCAAAATCCAGATTAAACATCAGAAGCTCCCAAGAATCCTCCAAATTTACGTAATTACGTGGAATGATGCAAGA
CCATCACGACACGACCCACAACGCCATCACCCTTACAAACCCTTTTCACCGAAGAAAAAAAAAGAGAAAAGAAAAGAAGAATCACTTTCCGGGCACAAAG
TTGGTGGCATAGGCCCAAGCGTTGTTGTTCACTGGGTCTGCAAGGTGGTCAGCCAGGTTCTCCAATGGACCCTTTCCAGTGACAATGGCCTGAACAAAGA
ACCCGAACATCGAGAACATGGCAAGCCGGCCGTTCTTGATCTCCTTGACCTTCAGCTCGGCAAAGGGATCGAAGCTGCCACCGGGGTAGAGTGGGTCAGT
CACCTCACCCAGGGGACCACCGGCCACACGGTAGCCCTCGACCGCGCCCATGAGGACCACTTGACAGGCCCAGATAGCCAAGATGCTCTGAGCGTGCACC
AGGCTCGGGTTCCCCAAGTAGTCGAGTCCACCCTCACTGAAGATTTGAGCACCGGCCTTGAACCACACAGCCTCACCAAACTTGACGCCATTGCGAGAGA
GTAGCTCTGGGAAAACGCATCCCAAAGCACCGAGCATGGCCCACCTGCAGTGGATGACCTCGAGCTCTCTGTACTTGACTCTGTCGCGGCCGTACCATGG
GCTTCCAGACACCGGGGCCCTGCTAGTACTCTTCCTCATGCTCACTCTTCCGTCGCCACGAACACCGATTCCGAATTCAGATTGGGTGCTGGCAGGCACC
GCCTTGCCGGCGAATGCTGGGGAGGAGAGAGCCATCGTTGCCATGTCGTAGCCTTAACGTTGCTTAGAGAAAGGGGTTGGGTTGGGCTGTGCTGTGCTGT
GTATA