« Back to Oryza glaberrima search


Detailed information on CNT30552159


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3015666Oryza glaberrimaZea mays24.713.4288.89108forward
CNT30147808Oryza glaberrimaBrachypodium distachyon24.03784.76105reverse complement
CNT30574781Oryza glaberrimaOryza barthii84.2195.5897.28368reverse complement

Expression of CNT30552159

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MKAIRCKRAQPGEGGTLQDSRLPHRPPPHPTGCAVQPRKKV

>peptide 2 (33 aa)
MGDRPGNSSRVHTSEDKVCRKDMCWSVRAVYDL*

>peptide 3 (32 aa)
MTYESYQIRVHTSEDKVCRKDMCWSVRAVYDL*

Sequence

>CNT30552159
GTAACATCCCGGCCTAGGGCTTAATAGGATTAATAGAATACTCATATCAACAAGTTGCAACTTCTTTTCCGGAAGCCAATCTCCAAAGAACTCCAGGGTT
AAGCGTGCTTGGCCTGGAGCAATTTGGGATGGGTGACCGACCGGGAAATTCTTCCCGGGTGCACACGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGT
TGGTCTGTGAGGGCAGTTTATGACCTATGAAAGCTATCAGATCCGGGTGCACACGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGTTGGTCTGTGAGG
GCAGTCTATGACCTATGAAAGCTATCAGATGTAAGCGGGCCCAGCCTGGGGAAGGCGGGACGTTACAGGACTCCCGCCTCCCCCACCGGCCTCCTCCCCA
CCCCACCGGCTGCGCTGTCCAACCGAGGAAGAAAGTG