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Detailed information on CNT30552153


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690186Oryza glaberrimaOryza sativa6478.1299.75400forward
CNT30242094Oryza glaberrimaAvena sativa16.828.5382.86105forward
CNT30660459Oryza glaberrimaTriticum dicoccoides27.6826.7493.06173forward
CNT30369415Oryza glaberrimaOryza glumipatula92.862.6399.83580forward

Expression of CNT30552153

Peptides detected in this lncRNA

>peptide 1 (73 aa)
RFNHEVMVQTQHVCIYLSTNSNKDVKNDSEESFGLGCMGCVDIILQMRQPMDGRRYSCNAWLAWLTAQHRFWN*

Sequence

>CNT30552153
CGTTTCAATCATGAAGTGATGGTGCAAACGCAGCATGTATGTATATATCTTTCCACCAACTCAAACAAGGACGTGAAGAACGACAGTGAAGAGAGCTTTG
GATTAGGATGCATGGGATGTGTTGACATTATATTGCAGATGAGACAACCGATGGATGGACGACGTTACAGCTGCAATGCATGGTTGGCTTGGTTGACAGC
ACAGCACAGATTTTGGAATTAAAGGAGATTTACGTAATTTGTTTGTACAGAAGAAGAGAGTAGTAATTGATTGGGGGTGGAAGACGACACAGGTAGCAGC
TGCATGGAGTAATTAATATTCTAGCTATATATGGATCGAGACGGGGGACGAATTCGATTATTGAGACTGGGGGCAGACGATATGATATGATATGATCAGT
AGTCGGCGGTGGGCAGCTGGTCGTGCGGGCGCTGGCCGATGAAGATGATGTCGTAGATGAGCGCGGCGATGGCGGCGCCGACGAAGGGGCCGAGCCAGTA
GACCCAGTGGTTGTCCCAGACTCCGGTGACGACGGCGGGGCCGAAGGAGACGGCGGGGTTCATGGAGGCGCCGCCGAAGGTCATGACGATCTCGAACACC
ACCGCGTTCCAGGCGCCCACGCCCG