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Detailed information on CNT30552148


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000270, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690639Oryza glaberrimaOryza sativa34.6750.7599.11337forward
CNT30369267Oryza glaberrimaOryza glumipatula68.1183.1797.89662forward
CNT30574855Oryza glaberrimaOryza barthii66.7786.19100649forward

Expression of CNT30552148

Peptides detected in this lncRNA

>peptide 1 (61 aa)
KNENKKKKNRGIAPASPSRHISCVLPPPPLFLSPPAPPPPPVQPSSSFATPSARLLAWLAA*

>peptide 2 (79 aa)
KTKTKRKKTGGSLLQALAATSPASYHRRRCSCLRRRRRRRRFSRRRPSPPHPLVSLRGLLLDAAASIRDEKAPDSTGSS*

>peptide 3 (33 aa)
MDKLCYFVPNDIDRHGAGVAPLDYTLLLHTIGI*

Sequence

>CNT30552148
AAAAACGAAAACAAAAAGAAAAAAAACAGGGGGATCGCTCCTGCAAGCCCTAGCCGCCACATCTCCTGCGTCCTACCACCGCCGCCGCTGTTCCTGTCTC
CGCCGGCGCCGCCGCCGCCGCCGGTTCAGCCGTCGTCGTCCTTCGCCACCCCATCCGCTCGTCTCCTTGCGTGGCTTGCTGCTTGACGCTGCTGCATCGA
TCAGAGACGAGAAGGCTCCAGACAGCACAGGAAGCAGTTGAACAGGAGTAACAAGGGAAGGAAAAGGTATGGAGGGTTCCAACGTTGGAGGAGTTGAGTC
GGAGTATTGAAGGAGTTAAAGCAAGTACAAGACGGACTTGTGCGATGGATAAACTGTGTTACTTTGTACCAAATGACATTGATCGGCATGGGGCGGGAGT
AGCACCCTTGGACTACACATTATTATTGCACACTATTGGAATTTAGTTTTAGATTATGTTTCTGCTTAGCATAAGTTTTGCGTAGAACTTGTAACGGTCA
TTTAAAGTTCCGGTCCTTATTTTCACGTGGAATTTGAGGAGCTAGGATGGTTTGGATTGTGTGGATTATATCGTTATTGAGTTATCTTATAACTGACTGT
CGTGGATGTCCGTAATTTTAGGAGGAGACTGCCGAAATTTCTAATAATTTTCGGAGTTAGTGGTTTTTGAGTGTATTTTGGTGTGGCACTCTAGGTACGT
GGTTACCTGGGATGTTACATAGACACCAACAGAAGAAAAAGATCCCCTAACTACTTAATTCTATTAGAGAACCTCGACCCGAAGTTGGCAATAGATGCAT
AATTGTCGTGTCAAGTTTACGACATTCATCATTTATTAGCTTGATATCTTCATCATGTCTTTGTAGTTGAACCCATCCTCGAAACTAATATGTTGCCCTG
AAAAACACCTGCAAATAAGATTTTGATGGTGTTTTTATCAAAAACCATATCATTTCTACTAAGCCTAAGAGC