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Detailed information on CNT30552138

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30595515	Oryza glaberrima	Oryza meridionalis	80.92	98.95	98.52	946	forward
CNT30110721	Oryza glaberrima	Oryza longistaminata	60.22	77.45	98.3	704	reverse complement
CNT3099916	Oryza glaberrima	Oryza rufipogon	96.32	100.27	99.29	1126	forward
CNT30580641	Oryza glaberrima	Echinochloa crusgalli	10.86	27.55	82.68	127	reverse complement

Expression of CNT30552138

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAAAAAVLRSSQMSRGDRGEATRHRQALKPGIGSDLF*

>peptide 2 (48 aa)
MGKLCCSQTDDDPEFNLLGLLVAVVLALLLLMLCTPPRRRRCVVYPCY*

>peptide 3 (30 aa)
MIWRTVCFCNFCVKTRKLQKRCLYCSSNRI*

>peptide 4 (32 aa)
MLLGWNENKSEVGLYSIVNTEQYVPDVMVHVT*

Sequence

>CNT30552138
AAAGGACATAGCCATGGAAAAGAAGTTGCATCATGGAAGGGCTAGACAGTGATGCCTCAACAACCAGCCAGCCCACATGATGCTTGAAAGCACCCCAAGA
TTCATAGCCAAAGTGTCATAGAATACAGAGACGAGACGACCTCCATCCGGAGTCTTTCAGAGTCTTTCAGATTCTGAAAACCCACTACTGCCAAGAAGCC
CTGCTTCTCTTCTACTTCCTCTCAAAGAAAGAGACCGAGAGAAGTTCATCTTGCAAGCCAAGAACTCTCGTCCTCTCCTTCTGAAGCGGGTGGCATGGGG
AAGCTGTGTTGCAGCCAGACGGACGACGATCCGGAGTTCAACCTGCTGGGGCTGCTCGTCGCCGTCGTTCTCGCGTTGCTGCTGCTGATGCTGTGCACGC
CGCCGCGGCGCAGGCGCTGCGTGGTGTACCCCTGCTACTAATGGCGGCGGCGGCGGCGGTGCTCCGATCCTCTCAGATGAGCAGAGGGGATCGAGGAGAA
GCGACGAGGCATCGTCAAGCTTTAAAGCCAGGCATAGGTTCCGATCTTTTCTGACCGATTTGCATATGCTCAGTTTCCGAAATAATTTATGCTGAATTTC
GAATTGTAATAGACTCGTTTCTGTTGCGAGTTGTTAGAATTTTTATGTGCATACTGTTGATTTGCGGCCTGATGGAATATATGAAATGATTTGGAGAACC
GTGTGCTTCTGCAACTTTTGTGTAAAAACCCGGAAACTTCAGAAAAGGTGTTTGTATTGTAGTAGCAACCGTATCTGAACATCTTTCTGTTAAATCGGTC
GAAACAAGCAGAATAGGATGCTGCTGGGATGGAATGAAAACAAATCGGAGGTAGGTTTATACTCCATTGTGAATACCGAGCAATATGTACCTGATGTAAT
GGTGCATGTAACATAGTACGATGTGAAGAGAATTAGAGGTGAGAGGAGAAGAATAACGAACCTAGGGTGTGCATGATTTCAGTAAAGCACAGGTTCAGCT
GATGCATGGGTCGTTGTGAGTTGGGGACCTGATCGATCTGGGGCAGGGAATGCAGCACAGCAGTAGGTGACAGAAGTAGGAACTTGCAGTAGTAGTTGGA
TGATGATGATTTGAGATGGGGAAACTTTTGTAAGCACTACATACCAACTAAATAGTCATGAAATCTTTT