Detailed information on CNT30552136


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004001, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30117985Oryza glaberrimaOryza nivara78.31100.3392.791845forward

Expression of CNT30552136

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMRSHDFVVWLRIIVKDRFLWEIHPNTLQCDHTGIYGMPLAK*

>peptide 2 (57 aa)
MRFSWVSFGKALSRISGTGQYRCKFRVVWVKRTTSAEINELFEQPYPRSRAGVRCFS*

>peptide 3 (92 aa)
MTLWFGYVLSLRTDSFGKSIRTRYSATTRVFMGCLWPSKLLSHRSWCANGCGMTRMRRRSVTHLLPIMDVFLPLLWRGTSRSRRHPRYFLSG*

>peptide 4 (61 aa)
MFFCAVVLLIYGPVYDGNVCKDYYPSDVIKQFTLIPHLFCMYKIVYPGTGTISQVMHNTLI*

>peptide 5 (81 aa)
SIAISLSSFSSLDFALSVPPHLLYRVAAPSFLEPPPPSERRRRSPPSPLAAGCLAAPRRHGAVPPRAEPVREKEDEDFPSR*

>peptide 6 (40 aa)
MKMKTSTRPPRSISKSKPSMKTFKCFVPSPKPRLWNKLVA*

>peptide 7 (33 aa)
MTPTLCKASLFDHIAPIFTMICCLKNALLSSHD*

>peptide 8 (31 aa)
PLPSLSPLSPLLILLSLCHRICSTGSPRLLS*

Sequence

>CNT30552136
TCCATTGCCATCTCTCTCTCCTCTTTCTCCTCTCTTGATTTTGCTCTCTCTGTGCCACCGCATTTGCTCTACCGGGTCGCCGCGCCTTCTTTCCTAGAGC
CGCCTCCGCCGTCGGAGCGTCGCCGGAGGTCGCCGCCGTCTCCCCTGGCCGCCGGTTGTCTCGCGGCGCCTCGCCGCCACGGCGCCGTGCCGCCCCGAGC
CGAACCAGTGCGGGAGAAGGAAGACGAAGACTTCCCCAGCCGCTGACAGCCCGGCCCCGCACCTCTCTCTTTCCATCAATCGCTGACAGCCGGGCCCCGC
GCGCCTTCTTCCTTCTATCAGCCGCCGACAGCTTTGTTTTCGCGTTAAGAGCCCGAGTTCGAAGAAGCCCTGGACGCCGCTTTCGAAGGAGATGACCCCA
ACCCTGTGCAAGGCAAGCCTCTTTGATCACATTGCCCCTATATTTACAATGATATGTTGTTTGAAAAATGCATTGCTTAGTTCACACGATTAACATATTT
AGGCCTCGGATTGTTTATACAACCGACGGACCAACCTAGTAGACGCACTTATATTACATAGGTTGATGTTTCCATACCTTTGATAGCTCCACAAATATTT
GCGCTGGAATCGTTATACGATTACCGAGGTAGTTTCGCTTAGCCATGCTTACGTTGTTGCTGTGTGGGAAACTTGGGTTATTCCAAATACATGTTTAAAA
ATCCGGTACGTTGTACGGAGGAGTTGTGAAATAAAATGTGTTGTGAAAGTGGTGATGATGCGGAGTCATGACTTTGTGGTTTGGCTACGTATTATCGTTA
AGGACCGATTCCTTTGGGAAATCCATCCGAACACGTTACAGTGCGACCACACGGGTATTTATGGGATGCCTCTGGCCAAGTAAATTGTTATCACATAGGA
GTTGGTGTGCCAATGGTTGTGGAATGACGAGGATGAGGAGACGAAGTGTTACACATTTATTGCCCATCATGGATGTCTTTTTGCCTCTATTGTGGCGTGG
TACCAGTAGGAGTAGGAGGCATCCTCGGTATTTCCTGAGTGGATGATGACTGTTATTGCCTGATACTCGGCTATGGATCTTAGCCCAACAAGGTGACATG
CGATTTTCATGGGTTAGCTTTGGAAAGGCCTTATCAAGAATTTCCGGTACCGGCCAGTACCGGTGTAAGTTTCGTGTCGTGTGGGTAAAGCGTACAACCT
CTGCAGAGATTAATGAACTGTTCGAACAGCCGTACCCACGGTCAAGGGCGGGTGTAAGGTGTTTCTCATAGCGTAGATTTGTTTGACAAATGTCTGTGAA
GAAGTGATTATTGGGAAGGGTAACGTTTCCAGAGTCCGCCTGTGTGGCAGACGGCTAACCTGGGTGGTTAGGAACGGATCTGTGTGACCTGGGGTGTCGT
CCGACACCGAGGTGTTGTTAGGGCCATGATGATGGCGTTGTTGTGCTAAGATAACTGTGTGGGCTATGTGTTGTTGTGAAAGTGAGAAGAAGCTAATAGA
GGAAACAAAATAATTGTTGTTCGTTAATCGTGACAAGTTGTTGCAAAGCAACTTGTGGAATGGTTCGAGGCGTGAGCCTCCTCCCGACAACTAAAACTTG
ACTCACTCACTAGGAGTTTTGTAAAATAAATCACTTTGCCAAAAAGGCAGCTTTCGCAAATAAAACCTTAGCCTCCTTGTTTAAACCTAACATGTCATTC
TTTTCCCTGGCTTGCTGAGTACGTTAAGTACTCACCCTTGCCCATATAATAATCTATAGAGTATGAAGATGAAGACGTCGACCCGACCGCCGAGGAGTAT
CTCCAAGAGCAAGCCGAGTATGAAGACTTTTAAATGTTTCGTGCCTAGCCCCAAGCCTCGCCTGTGGAATAAGTTAGTTGCCTAGGTTCTTTGCCTAGTG
CGTAGTTGCTTAGTCGCTTAGTTTCTCCGCGTTATTCGCTTCTGCGCCATCGTTTTTATGTTTTTCTGTGCTGTTGTGTTGCTCATCTATGGGCCTGTCT
ATGATGGCAACGTTTGTAAGGACTACTACCCCAGTGACGTAATAAAGCAGTTTACTTTGATTCCACATTTATTCTGTATGTACAAGATAGTGTATCCTGG
GACTGGTACTATATCACAGGTAATGCATAACACCCTGATATAAGTTAGTTGTGTTTATGGCTAACAAATATCGGGGCGTTACAGATTGTCCATGCACTTT
ACTCTAATTTTAAATACCTCTTAAAATATTGTTCAACGACAAGAAGAAAATACATACTTGACCGATCTGATGTAATTTCATATTAGCGGGCTACATCATA
TTCTTTTTCACATGACAACGTCATACCTTAGATCTCAATCCGGCCCACCATGGTCA