Detailed information on CNT30552135


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3ECH2|LRL28_ARATH, E-value = 3e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690017Oryza glaberrimaOryza sativa67.2719.8687.95224forward
CNT30580009Oryza glaberrimaEchinochloa crusgalli32.138.0985.98107forward
CNT30594890Oryza glaberrimaEragrostis curvula31.539.687.62105forward

Expression of CNT30552135

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MTCGGGMPLPMPSPSQKNGLGGTCNASTPPSSISIASLIVGRSCDFI*

>peptide 2 (70 aa)
MVSEALATHPHPLRASLLPHSSSADRVISSECTTAQQGIASSPAHACQQRWISHQLVDLLLAGHTPMMGST

>peptide 3 (65 aa)
FNYSIVLFGNCSKLGGVKVRIHDLWRWHAIANAIPIAEKWSRRHLQRIHTPFEHLYCLTHRRPIV*

Sequence

>CNT30552135
TATTCAACTATTCCATCGTCCTCTTCGGAAATTGCAGTAAGCTCGGAGGAGTGAAAGTAAGAATCCATGACTTGTGGAGGTGGCATGCCATTGCCAATGC
CATCCCCATCGCAGAAAAATGGTCTCGGAGGCACTTGCAACGCATCCACACCCCCTTCGAGCATCTCTATTGCCTCACTCATCGTCGGCCGATCGTGTGA
TTTCATCTGAATGCACCACAGCCCAACAAGGCATAGCTTCCTCTCCAGCTCATGCATGTCAGCAACGTTGGATATCTCATCAACTTGTTGATCTGCTATT
AGCTGGTCATACACCCATGATGGGTAGTACGCC